Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0960 ATGGATCCAGTAGCTGCACAAGGACGTCCTCTCCCACCTCCGTTTCTCACCAGAGATCTGCACCTTCACCCTCACCACCAATTCCAGCCTCACCACCACGCCGACGACCACCACCACCCCGTTAACGGTGGCGGCTTGCCCCACGGTGGTCAAAAGCGAGATCGAGACCAGcacgacaacaacaacaaccccGCTGCTGGAGAGGGAGGTAAGGAGCTAGGCCCGGCCTCCTCCGCGGGAGAGCCCAACGGGCCTGGCGAGAACAGCGCCAGGAGGCCGCGCGGGAGGCCTGCCGGCTCCAAGAACAAGCCCAAGCCCCCCATCATCATAACGCGCGACAGCGCCAACGCCCTGCGCTCCCACGTCATGGAGATCGCCAACGGCGGCGACATCATGGACAGCGTGGCCACCTTTGCACGGCGGAGGCAGCGTGGGGTTTGCATTCTCAGCGGCAGCGGCACTGTCACCAATGTCACCCTCCGGCAGCCGGCCTCACCCGGTGCAGTCGTGACTTTGCACGGGAGATTTGAGATTCTCTCGCTGTCCGGGTCCTTCCTCCCGCCGCCCGCCCCGCCCGCTGCGTCCGGGCTGGCCATATACCTGGCCGGCGGGCAGGGGCAGGTAGTCGGGGGAACGGTGGTGGGCCCGCTGCTGGCATCGGGGCCGGTGGTGATCATGGCGGCTTCGTTCGGGAATGCGGCGTACGAGAGGCTGCcgttggaggaggaggaggcggGGGCGCTGCCAGCGGGAAGTGGAGGATTGGAGTCGCCGGGAGGGGGAATTGTGggacagcagcagcagcagcagcaacaaCTAGTGGGAGGAGATCCTAACAATTCGCTATTTCATGGAGTGCCTCAGAATCTTCTCAATTCAGTTCAATTACCAGCTGAGGGTTATTGGGGTACTGGAGGAGCAACTGTTCGTCCTCCATTTTAA 942 0.5902 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHHADDHHHPVNGGGLPHGGQKRDRDQHDNNNNPAAGEGGKELGPASSAGEPNGPGENSARRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGGDIMDSVATFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGTVVGPLLASGPVVIMAASFGNAAYERLPLEEEEAGALPAGSGGLESPGGGIVGQQQQQQQQLVGGDPNNSLFHGVPQNLLNSVQLPAEGYWGTGGATVRPPF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0960 313 Pfam Plants and Prokaryotes Conserved (PCC) domain 119 231 IPR005175 -
Sto6g0960 313 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 246 - -
Sto6g0960 313 MobiDBLite consensus disorder prediction 27 110 - -
Sto6g0960 313 CDD DUF296 119 186 IPR005175 -
Sto6g0960 313 ProSiteProfiles PPC domain profile profile. 115 251 IPR005175 -
Sto6g0960 313 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 313 IPR014476 GO:0003680
Sto6g0960 313 MobiDBLite consensus disorder prediction 27 42 - -
Sto6g0960 313 MobiDBLite consensus disorder prediction 261 279 - -
Sto6g0960 313 PIRSF ESCAROLA 17 313 IPR014476 GO:0003680
Sto6g0960 313 Gene3D - 118 249 - -
Sto6g0960 313 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 313 - -
Sto6g0960 313 MobiDBLite consensus disorder prediction 245 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0960 Sto-Chr6 9512276 9513217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0960 1 304 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.873 7.70e-90 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0960 - - pop:7488905 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0960 6 9512276 9513217 Sto6g0960 6 9512276 9513217 ECH