Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0953 ATGAGCTTCTTTCAGGGATTCATCGACTCGCTCAGCTCCATCTTGTCTTCCCCCAACTCTTCTGATGATTCTCCCTCGAATTCCAACCTTCCTACCTCTTCCAATATGCAAGGCGTCCCTGAGCCCTCAGTTTCCAACGAACGAGTCGCTTACAAGCTCAAAGGGTACTTCGATTTGGCCAAGGAAGAGATTGATAAGGGTGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTGTTCTTCATTACAAGAACGCCCAGCGGATTTTGGTTGAAGCCAATTCTACTAGTGTGCCTTCGTAtatcacttccagTGAACAAGAAAAGGTGAAATCTTATCgtgaaaaaatatcaaaatggcAGGGTCAAGTTTCTGAGAGATTGCAGATTCTAAGTAGACGAGCAGGTTTAGTTATCATAaaatatttACAGGGAATCTCAACTCGTCGACAAACTGCTGCCGTTCCACTTAAACCATCAAATGCTAGAAAAAATGTGTTGCAAAAGAAACCACAAAGAATTACTCAGATGGATAAAGATGTAACCCCGAAATCTAGCCAAGCATCTGGTGGCAACTATGATgcaaaattagttgaaacaatTAACACTGCTATAGTTGATAGAAGTCCTTCTGTAAGATGGGAAGATGTTGCTGGTCTTGAGAAAGCAAAGCAAGCTTTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACCGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGGAAAACCATGCTTGCCAAAGCTGTAGCTTCAGAATCAGAAGCAACATTTTTTAATGTATCTGCAGCTTCCTTGACATCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTATTCATGGTAGCTATTTCCAGGCAACCATCTGTGATTTTCATTGATGAGATTGATAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTTCTTATTCAGTTTGATGGGGTGACCTCCAATCCGAATGATATTGTAATTGTCATCGGTGCTACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTCGtgaagagaatatacataccttTACCGGATGAAAATGTTCGGAGACTTTTATTAAAGCACAAACTCAAGGGTCAAGCGTTCTCCTTACCTAGTAGAGATCTAGAAAGACTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTACAAGCCTTGTGCGAAGAAGCAGCTATGATGCCAATTAGAGAGCTAGGTTCGGACATTCTCAGAGTAGAGGCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAATGCAATGGCTGTGATTAGACCCAGTTTAAACAAAAGCAAGTGGCAAGAGCTTGAACGCTGGAATGAGGAGTTTGGCTCTAACTGA 1461 0.4011 MSFFQGFIDSLSSILSSPNSSDDSPSNSNLPTSSNMQGVPEPSVSNERVAYKLKGYFDLAKEEIDKGVRAEEWGLIDDAVLHYKNAQRILVEANSTSVPSYITSSEQEKVKSYREKISKWQGQVSERLQILSRRAGLVIIKYLQGISTRRQTAAVPLKPSNARKNVLQKKPQRITQMDKDVTPKSSQASGGNYDAKLVETINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPNDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRRLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGSDILRVEANQVRGLRYEDFKNAMAVIRPSLNKSKWQELERWNEEFGSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0953 486 CDD MIT_spastin 53 131 - -
Sto6g0953 486 Gene3D - 210 480 IPR027417 -
Sto6g0953 486 Pfam ATPase family associated with various cellular activities (AAA) 251 381 IPR003959 GO:0005524|GO:0016887
Sto6g0953 486 Gene3D - 382 464 - -
Sto6g0953 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 483 IPR027417 -
Sto6g0953 486 CDD AAA 236 381 - -
Sto6g0953 486 PANTHER BNAC04G50250D PROTEIN 4 486 - -
Sto6g0953 486 PANTHER AAA DOMAIN-CONTAINING 4 486 - -
Sto6g0953 486 ProSitePatterns AAA-protein family signature. 353 372 IPR003960 GO:0005524|GO:0016887
Sto6g0953 486 Gene3D - 45 136 - -
Sto6g0953 486 Pfam AAA+ lid domain 406 437 IPR041569 -
Sto6g0953 486 MobiDBLite consensus disorder prediction 15 43 - -
Sto6g0953 486 SMART smart 53 130 IPR007330 -
Sto6g0953 486 SMART AAA_5 247 383 IPR003593 -
Sto6g0953 486 MobiDBLite consensus disorder prediction 15 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0953 Sto-Chr6 9439378 9446589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0953 210 436 Calmodulin-binding Proteins AT3G56690 42.797 1.56e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0953 K13254 - gmx:100780946 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0953 6 9439378 9446589 Sto6g0953 6 9439378 9446589 ECH