LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g0940	ATGGGAAGAGGAAGAGTTGAATTGAAGAGGATAGAGAACAAAATCAATCGGCAAGTGACTTTCTCAAAGAGAAGAAATGGTTTGCTGAAGAAAGCTTATGAACTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATTTTCTCTGGTCGTGGCAAGCTCTATGAATTTGGAAAATCACAAAAACACTTGAACGATACCAGAGGTGCTCTTTTACTCCTCAAGACTCCAATGTTAATGAACTGGAAACCcagGCATTTGCTTGGAGAAGACCTTGGACCATTGAATGTGAAAGAACTGCAAAATCTTGAGAAGCAGCTTGAAGGAGCTCTAGCTCAAGCTAGGCAAaggaagACACAAATTAtgattgaacaaatggaagatCTTCGCAgaaagGAACGCCATCTTGGGGACATTAACAAGCAACTTAGGCTCAAgcTTGAAGCAGAAGGATATAATCTTAAAGCCATAGAAAGCATGTGGAACTGTAATTCAACAGCTGGGAATAGCAGCTTTGCTATGCAACCTTCTCAAACCAATCCTATGGAGTGCCAACCAGAACCTTTCTTGCAAATtggGTACCATCAGTATGTTCAAGCTGAAACATCTAATGTTTCAAAGAATATGGGATCTGAAACAAACTTCATGCAAGGATGGCTCCTTTGA	666	0.3814	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGKSQKHLNDTRGALLLLKTPMLMNWKPRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTQIMIEQMEDLRRKERHLGDINKQLRLKLEAEGYNLKAIESMWNCNSTAGNSSFAMQPSQTNPMECQPEPFLQIGYHQYVQAETSNVSKNMGSETNFMQGWLL	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g0940	221	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	60	-	-
	Sto6g0940	221	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	78	207	-	-
	Sto6g0940	221	Gene3D	-	13	70	IPR036879	GO:0003677\|GO:0046983
	Sto6g0940	221	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Sto6g0940	221	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Sto6g0940	221	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Sto6g0940	221	ProSiteProfiles	K-box domain profile.	63	153	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Sto6g0940	221	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Sto6g0940	221	Pfam	K-box region	82	147	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Sto6g0940	221	PANTHER	MADS BOX PROTEIN	78	207	-	-
	Sto6g0940	221	PANTHER	MADS BOX PROTEIN	1	60	-	-
	Sto6g0940	221	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Sto6g0940	221	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Sto6g0940	221	SUPERFAMILY	SRF-like	2	61	IPR036879	GO:0003677\|GO:0046983
	Sto6g0940	221	CDD	MADS_MEF2_like	2	58	IPR033896	GO:0000977\|GO:0045944
	Sto6g0940	221	Coils	Coil	97	120	-	-
	Sto6g0940	221	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g0940	Sto-Chr6	9259612	9264772	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto6g0940	1	221	MADS-box Gene Family	AT2G45650	57.540	5.51e-90	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Sto6g0940		K-box	1.1e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g0940	K09264		-	rcu:8258483	315.079

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto6g0940	6	9259612	9264772	Sto6g0940	6	9259612	9264772	ECH
	Sto6g3303	6	39256617	39261416	Sto6g0940	6	9259612	9264772	ECH