Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0938 ATGGTGAGAGGGAAGACTCAGATGCGGCGTATAGAGAACGCGACAAGCAGGCAAGTGACGTTCTCGAAGCGTCGGAATGGGCTCTTGAAGAAGGCCTTTGAACTCTCAGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCCCCAGAGGCAAGCTCTATGAATTTGCAAGCACcaggtacatatatatatatatatatatatatataaatctacGTAAGGTGTGGTTTGTTTTTTATGCTATGGGAAGCATAGAAGCTGTTTGTTCAGTGTTTGGGAAACCATga 291 0.4124 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASTRYIYIYIYIYINLRKVWFVFYAMGSIEAVCSVFGKP 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0938 96 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Sto6g0938 96 PANTHER MADS-BOX PROTEIN SOC1 1 61 - -
Sto6g0938 96 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Sto6g0938 96 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto6g0938 96 PANTHER MADS BOX PROTEIN 1 61 - -
Sto6g0938 96 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g0938 96 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto6g0938 96 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto6g0938 96 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto6g0938 96 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Sto6g0938 96 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto6g0938 96 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0938 Sto-Chr6 9245796 9246220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0938 1 60 MADS-box Gene Family AT2G45660 93.333 3.17e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto6g0938 SRF-TF 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0938 - - csin:114271213 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0938 6 9245796 9246220 Sto6g0938 6 9245796 9246220 ECH