Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0917 ATGGATTCATGGACTCCGCCAAACGCGGTCTTCCGAGACTGCTCTCAAGGTGTCTGCAGCATCTACTGCCCCCAATGGTGCTACATCATctaccctcctcctcctccgtcGTCCTCCCTCACCTTCGGATTCGTCACCTCCGATTCCGATAACTCCGACTCCGATTCCTCGCGATTCCAGCTCTCCCCTCTCATCGTCGCTCTCATCGGCGTCTTGGCCAGCGCCTTCGTCTTAGTCACCTACTACACCCTAATCTCCCGCTTCTGTAAACGCAGACGACAGCAGATCCACGAGAACGGCGATTCCCTCCCGAACGACGACGTCTTGGCGCACGCTTCCGTATCTTCGTCTTCCTCGGGATTAGACGAAACCCTAATCAAATCGATCGCGGTTTGCAAGTACAAGAGAGGCGAGGGGATCGTGGAAGGCACGGATTGTTCGGTGTGTTTGAGCGAATTCGAAGAGAGCGAGAGCTTGAGGTTGATGCCGAAATGTAACCACGCGTTTCACATTCCGTGTATCGATACGTGGTTGAAATCGCATTCCAGCTGTCCTCTGTGCCGATCCAACATCGTGATCTCCGCTAATAATTCCGGTactgattcttcttcttctactactactactactactactgtgAATCAGCGAGAAACTCCATTGACGCATCAGGAAGCTACTACTACTACACATGTGAATGTGTCTGCACTGCGATATCAAAATAGGAACGATACTGTTATAGTAATTGAGGGTTTTGAAGAAGAAATTAGGGTTGGATTTGGGGGAGAGGGAAGAAATGGGTGTGAATTGATGAATTCTTGTTCGAGTCGAAATCAGGGGAGATTATTAGTGGCTGATGTATTGAGAGctagagatgatgatgatgaagatgatgaagaagaagttCTTCAGGTAGGATCATCCAAAGGGAAATAA 933 0.4437 MDSWTPPNAVFRDCSQGVCSIYCPQWCYIIYPPPPPSSSLTFGFVTSDSDNSDSDSSRFQLSPLIVALIGVLASAFVLVTYYTLISRFCKRRRQQIHENGDSLPNDDVLAHASVSSSSSGLDETLIKSIAVCKYKRGEGIVEGTDCSVCLSEFEESESLRLMPKCNHAFHIPCIDTWLKSHSSCPLCRSNIVISANNSGTDSSSSTTTTTTTVNQRETPLTHQEATTTTHVNVSALRYQNRNDTVIVIEGFEEEIRVGFGGEGRNGCELMNSCSSRNQGRLLVADVLRARDDDDEDDEEEVLQVGSSKGK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0917 310 MobiDBLite consensus disorder prediction 198 221 - -
Sto6g0917 310 SUPERFAMILY RING/U-box 140 196 - -
Sto6g0917 310 MobiDBLite consensus disorder prediction 290 310 - -
Sto6g0917 310 SMART ring_2 146 187 IPR001841 -
Sto6g0917 310 Pfam Ring finger domain 145 188 IPR001841 -
Sto6g0917 310 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 297 IPR044675 -
Sto6g0917 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 193 IPR013083 -
Sto6g0917 310 CDD RING-H2_PA-TM-RING 145 188 - -
Sto6g0917 310 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 11 297 - -
Sto6g0917 310 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0917 Sto-Chr6 9035857 9036789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0917 11 295 C3H Transcription Factor Family AT3G03550 42.810 4.51e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0917 - - lang:109355345 218.779