Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0894 ATGCTGCTTGGGCAAACTCCTTCTGTTAACTTCATATCCAAACCTATTCGCTTGGAATTGCATTTTCAAAGCCATTCTCATCATgctcgtcttttcttcttcgcTCACACTTGTTTCGCTGACACATCCGTTTCAAGTTCAAGAAAGCTTCCCGCAAGTGTTGGAAATGGAAATGCGATTCTCGTTAGAGCTGGCTTAGGAGACAGTTTCAAAAAAGTGAAGGCTCTCATACACAGAACTTCTCGCTTGAAGCGGGAAAGAAGCAGTAATGATGATAACCTAGTTGTTGAACATGCGACATTAGGAATAGAAGATAATTTGGAACAGTCTGAAAACGCTGAAAACAGAAAAGCAAGTTCAGGTGTATCAATTGCAAGACGTTCTGACTCTCATTTAAAAGGATGGGACACTGGAGGATCTCTTCGCACTGTTATGTCTGATTCACAAAAACGTCTAAAGGAACAGAGAAAACCATTTGCTGACAGTGACTTTTTCAGTCGAAAGTCCTTTAAAGATCTAGGGTATAGTGAATATATGATTGAATCACTGAAAAAGCAATTTTTTCTCCGGCCTTCACATATACAGGCCATGGCATTTGAACCGGTATTTAGTGGAAAGAGCTGTGTCATAGCTGATCAAAGTGGTTCTGGAAAGACATTAGCATACCTTGCACCAATAATTCAGAATCTTAGACAAGAAGAAATGGAAGGACGTAGCAAATCCTCTTCGCAGGCTCCTCGAGTGGTTATATTGGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCAATGTCAAAATCTGGGGTGCCCTTCAAATCTATGGTTGTAACAGGTGGCTTCCGACAGAAAACTCAACTTGAGAATTTACAGCAGGGTGTTGATATTTTAATAGCGACACCTGGTCGTTTTATGTTTCTCATCAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCAGTGTTGGATGAAGTAGATATACTTTTCGGTGATGAGGACTTCGAAGCGGCACTTCAGTGCTTGATTAATTCTTCACTAGTTGCCACACAATATTTATTTGTGACTGCTACTTTACCGAAAGAGATCTACAATAAACTAGTTGAAGTTTTTCCTGATTGTGAAGTGATCATGGGACCTGGTATGCACCGGATAAGCACTCGCCTTGAGGAGGTTCTAGTTGATTGCAGTGGAGAAGATGGACAAGAAAAATCTCCTGAAACGGCATTTCTAAATAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGGAACTCCTGTCTCAAAAACCATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTGAAGCGATTTGATAGAAAAGAAATACGACTACAAGTTCTACCTTTCCATGCCGCCATGACACAAGAATCTCGGCTTGCTAATATGGAAAAGTTTACACGTTCTTCACCGAAAGAAGTCTCCCAATTTTTGGTTTGCACAGACAGAGCATCTCGAGGAATTGACTTTACCGGAGTGGACCATGTCATACTTTTCGACTACCCACGCGATCCAAGCGAATACGTACGTCGTGTTGGAAGAACTGCAAGAGGTGCAGGTGGAAGGGGTAAGGCATTTATCTTTGTTGTTGGAAAGCAAGTTTCGCTTGCACGTAGAATTATGGAAAGAAATAGGAAGGGCCACCCTCTACATGATGTTCCATCTGCCTATGAGTGGATGAAGTAG 1728 0.4086 MLLGQTPSVNFISKPIRLELHFQSHSHHARLFFFAHTCFADTSVSSSRKLPASVGNGNAILVRAGLGDSFKKVKALIHRTSRLKRERSSNDDNLVVEHATLGIEDNLEQSENAENRKASSGVSIARRSDSHLKGWDTGGSLRTVMSDSQKRLKEQRKPFADSDFFSRKSFKDLGYSEYMIESLKKQFFLRPSHIQAMAFEPVFSGKSCVIADQSGSGKTLAYLAPIIQNLRQEEMEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQKTQLENLQQGVDILIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEAALQCLINSSLVATQYLFVTATLPKEIYNKLVEVFPDCEVIMGPGMHRISTRLEEVLVDCSGEDGQEKSPETAFLNKKSALLQLAEGTPVSKTIVFCNKIETCRKVENALKRFDRKEIRLQVLPFHAAMTQESRLANMEKFTRSSPKEVSQFLVCTDRASRGIDFTGVDHVILFDYPRDPSEYVRRVGRTARGAGGRGKAFIFVVGKQVSLARRIMERNRKGHPLHDVPSAYEWMK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0894 575 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Sto6g0894 575 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 68 574 - -
Sto6g0894 575 Gene3D - 140 380 IPR027417 -
Sto6g0894 575 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 68 574 - -
Sto6g0894 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 380 IPR014001 -
Sto6g0894 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 419 575 IPR001650 -
Sto6g0894 575 SMART ultradead3 187 395 IPR014001 -
Sto6g0894 575 CDD SF2_C_DEAD 392 543 - -
Sto6g0894 575 Pfam Helicase conserved C-terminal domain 416 532 IPR001650 -
Sto6g0894 575 Pfam DEAD/DEAH box helicase 193 366 IPR011545 GO:0003676|GO:0005524
Sto6g0894 575 CDD DEADc 179 368 - -
Sto6g0894 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 544 IPR027417 -
Sto6g0894 575 SMART helicmild6 443 533 IPR001650 -
Sto6g0894 575 Gene3D - 390 566 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0894 Sto-Chr6 8788012 8793751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0894 169 554 Eukaryotic Initiation Factors Gene Family AT3G19760 26.684 1.06e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0894 K13179 - cit:102612063 680.633