Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0888 ATGTTAATACAGAGTTCTCTTCCTAGTTCAACTGAAGCTGCTCTATTTTATGTATCTGATAATGGGAAAGAAGAAATTCCGTGTGACTGGATGCCTAGTGCTGAAACTTGGCAGGTGTGCCTGAAACGCGAAAATTACTCTCTTGACTGCTGCAGAAAAGAAGAAGCTATGCAAGAGGATAGAAGGAATGCTGACGATCCTTGTAGCTCAAACTATCTAAGTAGCTTAGGTCGGCCATCAACTGCCAGTACAATGACTGAAAATACTGTGCCTCATATAGTATACAGGAGGAAGAGGCTACGGAATAAATCAACTGCACCCCTCTTAAAGATAGGACCAATGAATGGGCAGACAAGTGTTCATTGCCCCTCAGTCATAAGCTCCTGTGCTCATTTATCATCGGCTGAGGATCAGCCAGCTGGTTCTCAAGTTAAGCATGAAATTGAAATGGTTAAAGATCCCATTGTGCCTGTTGTCATATGTGATGGAGCAACAGAGAATGGCATGCTTAAAAATTTAGGAATTGACAGTGTTAATGATAGTTGCTCCTCATCAAAATCAAATATGGAAATTGCTTCAGATTCCATAGAAACCGAAATGGATGAAACTGGTGAATGCTCCTCCTCTAGTGTAGCAGTTATGGATATCCTGAGGGAAGACTTATCAGCCAAGGATTTCTGCATCAAAATTTTAAGAAGCCATGGACTTCTTGGAGGAGACTCTCATGCTAACAATGTGGGAGAGGCTGCTACCGCTGGTAATAGCTCCTATTCTCGGTCATGCAAAATATGTGATCACTCAGATGGCTCCTTGAACATGCTTATATGTGATCATTGTGAAGAGGCATTCCATCCATCTTGCTGCATTCCGCGATTGAAAAAATTCCCAGTTGATGATTGGTTTTGTCATTCATGTCAAAAACGGAAGCAAAAAATTCTTAAGGAGATGATTATTAGAAATTCACCAGCTATCGAAAGTGAAATGGACATATTTGGAGATGCATCAGTTAATGGTGGATTGAGTCCTATACTGTTGATGTTGAATGATTCTGAGCCAAACAGAACTGGTGTACGGGTTGGGAAAGGTTTTCAAGCAGAAGTTCCTGACTGGTCAGGTCCAACTAGAAGtgatgatgatgatcttgCTGAACCTTTGGAAATTAATCCTTCAGAATTTACCAGTTTGCTGGAGGGTAATATCAGAAAGCCAACTCGTCTCAGCTCCATTGGTAATTGGCTTCAGTGTCAGGAGGTTGTCGATAGAGTGAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCACTTTTCGAAGTCCAAACCGATGACTGGGAGTGCTTCTGTGCCATCCATTGGGATCCAGCTCATGCTGATTGTGCTGTACCTCAGGAGCTGGAAACAGATGAAGTTCTGAAGCAACTAAAGTATATAGAAATGCTGAGGCCCCGACTTTCCGCCAGACCTAAGAAACCTGATTGCACGAAGAACGATTCTTGTGCCTCTAATGTTGATTCTCAGTACATCAAATTTGATCCTTCTTCTCTTCACCACTGTCTTCCTGTTTGGCCAGATCATAATTTCATCCTTAGaTATGGCAAGGGTTCATCAAACACTTGGAGCTTTGTGTTATCATTCCCAAGAGACACAAACTCATATGGGGCCATAGGGTTCTCCCAAGATGGAACCATGGTGGGTTCTAGCGCCGTGGCGGCGTGGGTGGCGCCGCCGACAACGACCAACCATGGCTCATATTTGCAATACTATTTGGGTGGCACCACACAGAACCAAGTTCTTGCCTCCAAAGGAGACCTTTCTTTGGCAAGTGATTCTGCCTTTTATTCTACTTCCACACTCTTCTTGGCCTTCCAATTGCAAAATATTGAGAAGGAGCCTTCTTCACATCTCTTGTTTGCCATTGGACCCAATGGcttcttcccttctcctcctaaCTATCTCTTGAGTATTCACATTGATAGGATCTCCATCAAAGTTGATTATGAATcagGTGAAATCAAAGTGATATCAAACCTAGAATTGaaaagaagccatggatggctAAATATTGTTGGATGGAGTGTTGTTATGATAATAGGAGCCATAATTGGTCGATATTGCAAGCAATGGGACCCCATTTGGTTTTATTTGCATGCTTCCATCCAAACATTGGCATTTCTTGCTGGAATTGCTGCAATATTTTGTGgattttatttatctaaaaaCCTCAGTTCCAATGTCACTCTTCACAAAAATATTGGAATTCTCATTCTTGTCCTTGGATCCCTCCAGGTTTTGGCATTGGTGTTGCGACCAGGAAAGGaatcaaaaataagaaaatattggaattattatcatcataatGTGGGAAGAATGTTGATCATATTTGCACTTGCTAACACTTTCTATGGACTTCACTTAGGAGGAGAAGGATCAAAATGGTTTGGTGGTTATGGAATTGCTATTGGCATCTTGCTTATTCTTGCCCTCATTTTGGAGATAAGGATGCGATTCATGAAATCTAAAACACAAAAGCCTAATCCAACTAATGAAGTTGATTTCACTTCAATTATGGTGGTGAGATCAGAAGACGACTCTTGTGCCtcaaaaattgataataatgagCACATCCCTTTTGATACAACTTCTCTTCAGCACTGTGTTCCTGTTTGGGATGCTTATAATGCCATCCTTCGAGTAATGTCATTCCCCAGAAACATAAGCTCTTATGGAGCAATAGGGTTTTCCAAAGATGGAAGAATGGTGGGTTCAAGTGCAGTGGTGGGTTGGGTTGAACCAACCAccaataataacaaatatatgCAGTACTATTTGGGTGGCACCAAACCTGACCAAGTCTTGTTCTTGAAAGGGGAGCTTCCTTGGACCAGTCAAAGTGCTTATTTCACATCTTCAACTATGTTTTTGGTCTTCCAATTGCAAACCAATGACCCTTCTTCATTTCTCTTATTTGCTGTGGGACCCTCTGGATTCTTCCCTTCTGGCCCAGATTATGTCTTGTCCAAACATAGGGATAAGATCTCCCTCATCATTGATTATGGAACAGGAAAAGTGAAAGGCATCTCAGAGCGAAACCTAAAACTAAAAAGAGGGCATGGATCGCTAAATATTGTTGGATGGAGTGTTCTTATGATAATAGGACTCATAATTGCTCGTTATTGCAAGCAATGGGACCCCTTTTGGTTTTATTTCCACATTTCTATACAAACTATTGCCTTTTTTGCTGGAATTGTTGGAATCATATGTGGATTGGCTTTATCTAATAAACTCAGTTCCAACTTTACTCATCACAGAAATATAGGAATTCTCATTCTCGTCCTTGGATTCCTTCAGgTTATGGCTTTTGTATTGCGACCAGGAAAGGaatcaaaaataagaaaatattggaattattatcatcataatGTGGGAAGAATGTTGATCATATTTGCACTTGCTAACACTTTCTATGGACTTCACTTGGGAGGAGAAGGATCAAAATGGTTTGCTGGTTATGGAATCACTATTGCCATTTTAGTTATTCTTATCATCCTTTTGGAGATAAGAATGCGATTCATGAACTCTAGAACACCAAAGCCTAACCAAAATGATATGCCAAATTTCTATTATTAA 3624 0.3918 MLIQSSLPSSTEAALFYVSDNGKEEIPCDWMPSAETWQVCLKRENYSLDCCRKEEAMQEDRRNADDPCSSNYLSSLGRPSTASTMTENTVPHIVYRRKRLRNKSTAPLLKIGPMNGQTSVHCPSVISSCAHLSSAEDQPAGSQVKHEIEMVKDPIVPVVICDGATENGMLKNLGIDSVNDSCSSSKSNMEIASDSIETEMDETGECSSSSVAVMDILREDLSAKDFCIKILRSHGLLGGDSHANNVGEAATAGNSSYSRSCKICDHSDGSLNMLICDHCEEAFHPSCCIPRLKKFPVDDWFCHSCQKRKQKILKEMIIRNSPAIESEMDIFGDASVNGGLSPILLMLNDSEPNRTGVRVGKGFQAEVPDWSGPTRSDDDDLAEPLEINPSEFTSLLEGNIRKPTRLSSIGNWLQCQEVVDRVNGTICGKWRRAPLFEVQTDDWECFCAIHWDPAHADCAVPQELETDEVLKQLKYIEMLRPRLSARPKKPDCTKNDSCASNVDSQYIKFDPSSLHHCLPVWPDHNFILRYGKGSSNTWSFVLSFPRDTNSYGAIGFSQDGTMVGSSAVAAWVAPPTTTNHGSYLQYYLGGTTQNQVLASKGDLSLASDSAFYSTSTLFLAFQLQNIEKEPSSHLLFAIGPNGFFPSPPNYLLSIHIDRISIKVDYESGEIKVISNLELKRSHGWLNIVGWSVVMIIGAIIGRYCKQWDPIWFYLHASIQTLAFLAGIAAIFCGFYLSKNLSSNVTLHKNIGILILVLGSLQVLALVLRPGKESKIRKYWNYYHHNVGRMLIIFALANTFYGLHLGGEGSKWFGGYGIAIGILLILALILEIRMRFMKSKTQKPNPTNEVDFTSIMVVRSEDDSCASKIDNNEHIPFDTTSLQHCVPVWDAYNAILRVMSFPRNISSYGAIGFSKDGRMVGSSAVVGWVEPTTNNNKYMQYYLGGTKPDQVLFLKGELPWTSQSAYFTSSTMFLVFQLQTNDPSSFLLFAVGPSGFFPSGPDYVLSKHRDKISLIIDYGTGKVKGISERNLKLKRGHGSLNIVGWSVLMIIGLIIARYCKQWDPFWFYFHISIQTIAFFAGIVGIICGLALSNKLSSNFTHHRNIGILILVLGFLQVMAFVLRPGKESKIRKYWNYYHHNVGRMLIIFALANTFYGLHLGGEGSKWFAGYGITIAILVILIILLEIRMRFMNSRTPKPNQNDMPNFYY 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0888 1207 Pfam Eukaryotic cytochrome b561 682 802 IPR006593 -
Sto6g0888 1207 Pfam Eukaryotic cytochrome b561 1036 1156 IPR006593 -
Sto6g0888 1207 MobiDBLite consensus disorder prediction 67 85 - -
Sto6g0888 1207 ProSiteProfiles Cytochrome b561 domain profile. 647 838 IPR006593 -
Sto6g0888 1207 CDD DOMON_DOH 522 660 IPR045266 -
Sto6g0888 1207 PANTHER BNAC01G39800D PROTEIN 852 1188 - -
Sto6g0888 1207 PANTHER BNAC01G39800D PROTEIN 492 835 - -
Sto6g0888 1207 CDD Cyt_b561_FRRS1_like 1024 1170 - -
Sto6g0888 1207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 318 IPR013083 -
Sto6g0888 1207 CDD Cyt_b561_FRRS1_like 678 815 - -
Sto6g0888 1207 ProSiteProfiles Zinc finger PHD-type profile. 258 308 IPR019787 -
Sto6g0888 1207 ProSiteProfiles Zinc finger CW-type profile. 406 466 IPR011124 GO:0008270
Sto6g0888 1207 Pfam ELM2 domain 357 469 IPR000949 -
Sto6g0888 1207 SMART DOMON_3 551 639 IPR005018 -
Sto6g0888 1207 SMART DOMON_3 907 991 IPR005018 -
Sto6g0888 1207 Gene3D - 1012 1196 - -
Sto6g0888 1207 Gene3D - 665 842 - -
Sto6g0888 1207 SMART PHD_3 260 306 IPR001965 -
Sto6g0888 1207 ProSiteProfiles DOMON domain profile. 524 639 IPR005018 -
Sto6g0888 1207 SMART 561_7 681 802 IPR006593 -
Sto6g0888 1207 SMART 561_7 1035 1156 IPR006593 -
Sto6g0888 1207 ProSiteProfiles Cytochrome b561 domain profile. 998 1192 IPR006593 -
Sto6g0888 1207 MobiDBLite consensus disorder prediction 59 85 - -
Sto6g0888 1207 ProSiteProfiles DOMON domain profile. 882 994 IPR005018 -
Sto6g0888 1207 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 492 835 - -
Sto6g0888 1207 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 852 1188 - -
Sto6g0888 1207 Gene3D - 410 475 - -
Sto6g0888 1207 Pfam PHD-finger 261 307 IPR019787 -
Sto6g0888 1207 CDD DOMON_DOH 903 1012 IPR045266 -
Sto6g0888 1207 SUPERFAMILY FYVE/PHD zinc finger 256 310 IPR011011 -
Sto6g0888 1207 ProSitePatterns Zinc finger PHD-type signature. 261 305 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0888 Sto-Chr6 8702322 8720357 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto6g0888 Cytochrom_B561 3.4e-05 CL0328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0888 - - aprc:113864532 657.521