Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0880 ATGTTGCAGAAAATCCCTCCCTTGTTTAACTATAGATTTGGCAGTGTTATACCAAAGAAAGTAACACTAAAGGTGGCTTCTTCAAATAAATCGTGGAGGGTTGATATAGAGGAAGGAGATGATAGAGAGTTGTATTTCAAAAAGGGTTGGAATACATTTGTGGAGGATAATGGTTTGGAAATTTTGGAGTTCGTAGAGTTCAAATATGATGGGAATTCCACATTCAAGGTTAAGATGTATGAAAAATATGGCTGTGAGAAGGAGGTCCTGGAGGGTACCAATCAGAATAACTACTTTGACGCTGACCTGGAAAATCACCAAGGGAGAAAAAGGCCAATCCCTCAAGAAAGTCACAGAGAAAGAAACCCAACTGGTGAAAATAGACATAAGCGGAAGCTTGATCATGAGAtaaagaaggagaaggaagattCTGATGATTATGGCCATATTAACAAGAGGCCAGCACAGAAAGAAGCTGATGCAGAAGAAACTAGTAAGGTTATAATTAATGAAGCTGGTAACCGTATCAGGAAAATCGGCATGCATAAGAAACCACTGCAGCGCAAAGCATTTGACGATGGCAGCAAATGGGACTCTAAGAATCCTTCATTCAGAGTTCTTCTTACTCAAGCTTACGCAGAGAAGGGCGTTTTGTGCATGCCAACAGATTTTTTCAAGGAACATATGGAGAACAAGAAACAAAGGGCAGAAATAGAGACAGTGAACGGATCATGGAGTGTGACAGTGCTTCCTCATATGAAAAGGACTTGTACATTTGCCAGAATCAGTGCAGGGTGGTCAGATTGCGTCAGAGGGAACGAGTTCAAGGCTGGAGATATTCTCTTGTTCAAATTGATTCACAGAAGCAATAGTAGTTGTCCAAAGTTCTTAGTTCGTAAACTCAAGAATTAG 912 0.3958 MLQKIPPLFNYRFGSVIPKKVTLKVASSNKSWRVDIEEGDDRELYFKKGWNTFVEDNGLEILEFVEFKYDGNSTFKVKMYEKYGCEKEVLEGTNQNNYFDADLENHQGRKRPIPQESHRERNPTGENRHKRKLDHEIKKEKEDSDDYGHINKRPAQKEADAEETSKVIINEAGNRIRKIGMHKKPLQRKAFDDGSKWDSKNPSFRVLLTQAYAEKGVLCMPTDFFKEHMENKKQRAEIETVNGSWSVTVLPHMKRTCTFARISAGWSDCVRGNEFKAGDILLFKLIHRSNSSCPKFLVRKLKN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0880 303 MobiDBLite consensus disorder prediction 104 163 - -
Sto6g0880 303 CDD B3_DNA 13 80 IPR003340 GO:0003677
Sto6g0880 303 Pfam B3 DNA binding domain 5 80 IPR003340 GO:0003677
Sto6g0880 303 Pfam B3 DNA binding domain 206 296 IPR003340 GO:0003677
Sto6g0880 303 Gene3D - 184 301 IPR015300 -
Sto6g0880 303 PANTHER B3 DOMAIN-CONTAINING 4 288 - -
Sto6g0880 303 SUPERFAMILY DNA-binding pseudobarrel domain 198 296 IPR015300 -
Sto6g0880 303 SMART B3_2 1 83 IPR003340 GO:0003677
Sto6g0880 303 SMART B3_2 204 302 IPR003340 GO:0003677
Sto6g0880 303 ProSiteProfiles B3 DNA-binding domain profile. 203 302 IPR003340 GO:0003677
Sto6g0880 303 Gene3D - 2 85 IPR015300 -
Sto6g0880 303 SUPERFAMILY DNA-binding pseudobarrel domain 4 85 IPR015300 -
Sto6g0880 303 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Sto6g0880 303 CDD B3_DNA 202 300 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0880 Sto-Chr6 8628863 8630596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0880 4 286 B3 DNA Binding Superfamily AT3G18990 22.293 2.76e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto6g0880 B3 6.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0880 - - qlo:115964725 129.028