Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0833 ATGGGGCCAAATGCGGGTTCTTTGTCAGCGGCGGCGCAACAAGCCGAGAAGCTTAGAATGAATGGCAATAAGTGCTTCAATAAAGATCGTTTCGCAGCTGCCATCGATGCTTATACTGAGGCGATTACACTTTGCCCCAATGTTGCGGTTTATTGGACCAATCGTGCCCTATGCCATCGCAAACGAAATGATTGGGTGAGAGTGGAGGAAGATTGCCGGAGAGCTATTCAACTTGATAACAATTCAGTCAAGGGCCACTATATGTTAGGACTTGCATTGCTGCAGAGACAAGAATATGCTAAGGGTATCAGAGAATTGCAGAAGGCTTTGGATCTCGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTTGCAAAAGCAAGATACCAAGAGTGGGAACATTCATCTACCAAAAGATCATGGGAATTACAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAATATGTTATTGATATCTCCCAAAGGGAAGGATTTTTAGACGAAGATCCAACTTCTCACTTTGAACAGCTAGAGGCTTTAGGAAGAGTATTCAGTAAAGCTGCAGAGGATGACGTTCCTACTGAGGTTCCAGATTACCTTTGCTGTAAAATTACACTCGACATTTTTCGCGATCCTGTCATTACTCCAAGTGGACTTACATATGAGAGGGCAGTAATTCTTGAACATCTTCAGAAGGTGGGTAGGTTCGATCCGATCACGCGAGAACCGCTTAATCCTTCCCAGCTGACATCAAACTTGGCCATAAAGGAAGCAGTCCAGGCATTCTTGGAAAAACATGGATGGGCCTACAAGATAGATTAA 849 0.4464 MGPNAGSLSAAAQQAEKLRMNGNKCFNKDRFAAAIDAYTEAITLCPNVAVYWTNRALCHRKRNDWVRVEEDCRRAIQLDNNSVKGHYMLGLALLQRQEYAKGIRELQKALDLGRGANPKGYMVEEIWQELAKARYQEWEHSSTKRSWELQSLKEACESALKEKYVIDISQREGFLDEDPTSHFEQLEALGRVFSKAAEDDVPTEVPDYLCCKITLDIFRDPVITPSGLTYERAVILEHLQKVGRFDPITREPLNPSQLTSNLAIKEAVQAFLEKHGWAYKID 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0833 282 SUPERFAMILY TPR-like 13 134 IPR011990 GO:0005515
Sto6g0833 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Sto6g0833 282 Gene3D Tetratricopeptide repeat domain 3 148 IPR011990 GO:0005515
Sto6g0833 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Sto6g0833 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Sto6g0833 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Sto6g0833 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Sto6g0833 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Sto6g0833 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 281 IPR045200 GO:0000209|GO:0061630
Sto6g0833 282 SUPERFAMILY RING/U-box 197 279 - -
Sto6g0833 282 PANTHER CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED 8 281 - -
Sto6g0833 282 CDD RING-Ubox_CHIP 205 271 IPR045202 -
Sto6g0833 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0833 11 281 U-box Gene Family AT3G07370 68.635 3.81e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0833 K09561 - sind:105170112 464.151