Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0832 ATGGCGAAGTCTGGCGTGGTGGCGGAATCTGATCCGACGGCGGCGAGGGCGGCGAGGTTGAAGAAGGAGTTGCAGAGATTGGTGAAGTCCATCGTTGATGATGACGATTGCAGCATTCAAACCATTGATCAAGCTAAGGAAGCTCTGTGTGTGCTTAAGGACTTGAAGCTTCGAAAGAGATCATCACCATCACCGTCGTCGACCTCCTCGCTCTCTTTCAAGCTTCACAAGAGTACTTCTACTTGCCCTGAGGAATTTAGGTGTCCTCTATCCAAGGAATTGATGGGAGATCCCGTCATTCTTGCTTCTGGACAGaaattttttctttcaattatgcAGACATATGATAGACCCTTCATTCAAAGATGGCTTAAAGCTGGGAACAGGACATGCCCTCAAACTCAACAAGTCCTCTCACACACTCTCCTTACTCCAAATGACCTCATTAGGCAAATGATAGAACAATGGTGCAAAAACCATGGTGTAGAATTGTCCAACCAAGTTCACTGCCTTTACAATGAGGAAAGCATGATTACAGTCGCTGATCGCGATCAtttcctttctctgcttgaGAAAATGTCCTCATCATCACTTTCTGAGCAGAAAGCAGCAGCAAAGCAGCTTCGTTTATCCACAAAGAAAATACCTTCCTTTAGATCCCTCTTTGGTGAGACCTCAGAGTCCATCCCTAAGATCCTCAAACCAATCTCTGGAAGTGACTCTTTCAACAACATCCACCCTGATCTCCAAGAAGATGTGATCACAACACTTTTGAACATCTCAATCCTCGACAGCAACAAGAAGCTTGTAGCAGAAACTCCAATGGTGATTCCACTCCTTGTAAAAGCCTTGAAATCTGGAACAATAGAAACTAGAAGCAATGCTGCAGCAACCCTTTTCACTTTATCCGCTCTAGACTCAAACAAGGAGCTTATAGGCAAATCCGGTGCCTTAAAACCATTAATTGACCTTTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGCTGCTTCAGCAATTTTCACCTTGTGTGTCATCCATGAGAACAAGGCAAGAGCAGTGAGGGATGGTGCAGTGAGTGTGATTTTAAAGAAAATCTCTAGCCGGGTTCGAGTCGATGAATTGCTCACGATCCTCGCGCTTCTTTCGAATCACCAGAAAGCTGTTCAGGACATGGCAGATGCAGGAGCTGTTGCTAGCTTGTTGAGCATTATGAGGGAGAGTACTTGTGAACGAAACAAAGAGAATTGTGTGGCGATTCTTCAAACTATTTGTATGTATGATAGGACCAAGTTGAAGGAGGTAAAGGAAGAGGAGATCAAGAATAGAACAATCTCTGAGCTTGCACTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTTTGGAGAGACTGAATAGGGTTGTTAATATTACACACACTGCATAA 1434 0.4351 MAKSGVVAESDPTAARAARLKKELQRLVKSIVDDDDCSIQTIDQAKEALCVLKDLKLRKRSSPSPSSTSSLSFKLHKSTSTCPEEFRCPLSKELMGDPVILASGQKFFLSIMQTYDRPFIQRWLKAGNRTCPQTQQVLSHTLLTPNDLIRQMIEQWCKNHGVELSNQVHCLYNEESMITVADRDHFLSLLEKMSSSSLSEQKAAAKQLRLSTKKIPSFRSLFGETSESIPKILKPISGSDSFNNIHPDLQEDVITTLLNISILDSNKKLVAETPMVIPLLVKALKSGTIETRSNAAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDAASAIFTLCVIHENKARAVRDGAVSVILKKISSRVRVDELLTILALLSNHQKAVQDMADAGAVASLLSIMRESTCERNKENCVAILQTICMYDRTKLKEVKEEEIKNRTISELALNGTSRAKRKASGILERLNRVVNITHTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0832 477 ProSiteProfiles U-box domain profile. 81 163 IPR003613 GO:0004842|GO:0016567
Sto6g0832 477 PANTHER U BOX DOMAIN-CONTAINING 7 475 - -
Sto6g0832 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 163 IPR013083 -
Sto6g0832 477 CDD RING-Ubox_PUB 86 136 IPR045210 -
Sto6g0832 477 Gene3D - 184 469 IPR011989 -
Sto6g0832 477 SMART Ubox_2 85 156 IPR003613 GO:0004842|GO:0016567
Sto6g0832 477 SMART arm_5 263 304 IPR000225 GO:0005515
Sto6g0832 477 SMART arm_5 202 262 IPR000225 GO:0005515
Sto6g0832 477 SMART arm_5 385 426 IPR000225 GO:0005515
Sto6g0832 477 SMART arm_5 305 345 IPR000225 GO:0005515
Sto6g0832 477 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 7 475 - -
Sto6g0832 477 SUPERFAMILY RING/U-box 79 164 - -
Sto6g0832 477 SUPERFAMILY ARM repeat 170 467 IPR016024 -
Sto6g0832 477 Pfam U-box domain 83 160 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0832 Sto-Chr6 8251824 8255077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0832 152 477 U-box Gene Family AT3G07360 60.606 1.85e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0832 - - gmx:100809408 635.95