Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0829 ATGCCTCCTTTGAATTCCACAAGTGTTGCTGAATTCTCTGCTGATCCTGGGTTTGCTGAGAGAGCGGCCAAGTTTTCTTGCTTTGGAAGCAGGAGCTTCAATGGCAGAACAACAACCACAACCGCAACCACTCACACTCAGATTCAGGATCACAGATCTGATGCTCCTCCATTGATGATgacgaagatgatgatgcaGAATGGTGGTGGGAGGCTTCATAGAGTCTCGAGCACTCCTTCTCTCAAACCACTCCAATCCCAATCTTCTAATACCAATTCCCCTCTGAATTCTCAAGAGGAAGATGAATCTACAATCTCTCATCAAAACCCAAATGGGGAGATTTCTGGGATCATGATGAAACCTTCCCCTCCTGATGTCAATTCTAGAAAGAGaaaaccttcttcttcttcttcttccaaggcATCAAAACCCAAAGATTCTTCAACCTCTTCCCTTATTCCTCCTCCCAAGGGTGGTGAAGCTAATGAAAATTCAAATGCAAAAAGAAGGAAGGGAGATGAAGGAGAAGGGAATGAGGAAGGGAAACAGAACAAGAGTAGTAGTAATGAGTCAAAACCTGCTGAGCCACCAAAGGATTACATTCATGTGAGAGCAAGAAGAGGTCAAGCCACTGATAGCCATAGTCTTGCAGAAAGAGTGAGGAGGGAGAAGATCAGCGAGAGGATGAAGCTTCTGCAAGATCTCGTACCGGGTTGCAATAAGGTCACAGGTAAAGCACTTATGCTTGATGAGATCATAAACTATGTCCAGTCTTTGCAGCGACAAGTTGagTTTCTATCTATGAAATTGGCTTCTGTTAACACAAGACTTGATTTGAGTATTGACAATCTCATCACAAAAGATATATTtgaatcaaataataataataactcaaTTGGACAGCCAGGAACAGCAATATTCCCTTCAGATTCCTCAGCACAACCCTTTTGTGGGCAAAACCCAGCAATACACACTAATGCAAATCTCACACATTGTTCAGTGGAATCTTTAGATAATGCTCTGTTTGGCTTGCAACTACCTCCACTAAATGCCTTTAATGAACTTGGTTCTCAGTATCCAATGAGTTTCTGTGAGGATGATCTCCATACAATAGTTCAGATGGGTTTTGGCCAAACTGAGAATAGGAAAACACCAACACAATCCCCAGTCTTTAATGGTAATTATACataa 1191 0.398 MPPLNSTSVAEFSADPGFAERAAKFSCFGSRSFNGRTTTTTATTHTQIQDHRSDAPPLMMTKMMMQNGGGRLHRVSSTPSLKPLQSQSSNTNSPLNSQEEDESTISHQNPNGEISGIMMKPSPPDVNSRKRKPSSSSSSKASKPKDSSTSSLIPPPKGGEANENSNAKRRKGDEGEGNEEGKQNKSSSNESKPAEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDLSIDNLITKDIFESNNNNNSIGQPGTAIFPSDSSAQPFCGQNPAIHTNANLTHCSVESLDNALFGLQLPPLNAFNELGSQYPMSFCEDDLHTIVQMGFGQTENRKTPTQSPVFNGNYT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0829 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 277 IPR036638 GO:0046983
Sto6g0829 396 MobiDBLite consensus disorder prediction 30 57 - -
Sto6g0829 396 MobiDBLite consensus disorder prediction 163 186 - -
Sto6g0829 396 MobiDBLite consensus disorder prediction 69 197 - -
Sto6g0829 396 PANTHER BHLH TRANSCRIPTION FACTOR 6 395 - -
Sto6g0829 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Sto6g0829 396 Gene3D - 206 282 IPR036638 GO:0046983
Sto6g0829 396 Coils Coil 256 276 - -
Sto6g0829 396 CDD bHLH_AtBPE_like 199 284 - -
Sto6g0829 396 MobiDBLite consensus disorder prediction 128 155 - -
Sto6g0829 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 395 IPR024097 GO:0006355
Sto6g0829 396 MobiDBLite consensus disorder prediction 30 51 - -
Sto6g0829 396 SMART finulus 215 265 IPR011598 GO:0046983
Sto6g0829 396 Pfam Helix-loop-helix DNA-binding domain 213 260 IPR011598 GO:0046983
Sto6g0829 396 MobiDBLite consensus disorder prediction 71 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0829 Sto-Chr6 8208389 8210869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0829 6 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 46.556 1.13e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g0829 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0829 - - gmx:100801233 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0829 6 8208389 8210869 Sto1g2510 1 32544824 32546973 CCT