Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto6g0790 | ATGAGTACTCGATCTGGTAGAGGGCTTACTCTAAGAAGTTACCGGCGGAGGAAGTCAGTTTTGGACTTGGATCTTAATAGTGCTCCACCTGGTGAGAATCGGGAGCATGAGGGACCTTCGACCCTACCAGAACCTCAAATAGTTCATGCTGTCCAGCAACCTCAGGTTGTACAGCAACCTCAGGTTGTACAGCCTATTGATGTGGAGGCCATTGATGATGATGTTGTTGAATCTACACCAAGTGCTTTTGCAGAGGCtagaaacaattcaagaaggAATCGTGGGAGGACTATAGTTGATGTTGATTCAGAAGAGCGGACTAGGGTAACTAATAATAATCCCAACAATCGCAGAAAAGATTCATCAAACCAGACAGTTATTAATTGTGATCTCTATATAAACTTGGAAAGCAGTGGCTGTTCTATGAGTGAGGGTGTTAAAAAGGCACCTGAACCTCCAATAGAGCCTGTCTTTAACTGTCCAATATGTATGGGCCCATTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATATTTTGTAAGAGTTGCATCAAGGCCGCGATAAGTGCACAGGGTAAATGTCCTACATGCAGAAAAAAGGTTTCTGTGAAAGAACTTATAAGGGTGTTTCTACCGACAACTAGTTGA | 648 | 0.4213 | MSTRSGRGLTLRSYRRRKSVLDLDLNSAPPGENREHEGPSTLPEPQIVHAVQQPQVVQQPQVVQPIDVEAIDDDVVESTPSAFAEARNNSRRNRGRTIVDVDSEERTRVTNNNPNNRRKDSSNQTVINCDLYINLESSGCSMSEGVKKAPEPPIEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAISAQGKCPTCRKKVSVKELIRVFLPTTS | 215 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto6g0790 | 215 | ProSitePatterns | Zinc finger RING-type signature. | 175 | 184 | IPR017907 | - | |
| Sto6g0790 | 215 | PANTHER | ELFLESS, ISOFORM B | 1 | 215 | - | - | |
| Sto6g0790 | 215 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Sto6g0790 | 215 | MobiDBLite | consensus disorder prediction | 84 | 122 | - | - | |
| Sto6g0790 | 215 | MobiDBLite | consensus disorder prediction | 89 | 113 | - | - | |
| Sto6g0790 | 215 | SMART | ring_2 | 160 | 197 | IPR001841 | - | |
| Sto6g0790 | 215 | SUPERFAMILY | RING/U-box | 153 | 210 | - | - | |
| Sto6g0790 | 215 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 213 | IPR013083 | - | |
| Sto6g0790 | 215 | Pfam | Zinc finger, C3HC4 type (RING finger) | 159 | 197 | - | - | |
| Sto6g0790 | 215 | ProSiteProfiles | Zinc finger RING-type profile. | 160 | 198 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto6g0790 | Sto-Chr6 | 7920177 | 7921905 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto6g0790 | 12 | 214 | C3H Transcription Factor Family | AT5G48655 | 51.707 | 9.32e-51 | 162 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto6g0790 | K22651 | - | gmx:100792853 | 259.225 |