Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0700 ATGTATTCTGGGAAAGCACCCTTGACCATATTCTTCATTTCAGGTTTCACCTTTGCTGAATTTGGTTGCATACGGACACGAAACAGTAAAGTTACTTGCTGTCATTTCTCTTCTGATGGAAAATTGCTTGCCAGTGCTGGACATGACAAGAAGGTTGTCCTCTGGAACATGGACAATTTACAAACACAGAGCACTCCAGAAGAACACAAATTAGTAATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACTGCCTCAGTTGATAAATCTGTTCGACTATGGGATGCAGCCAATCCAAGCTATTGTCTGCAAGAATATAGTGGGCACAGTTCAGCCGTTATGTCTCTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGTTTCTGTGATACTGACAACGAGATTCGCTATTGGAATATTACATCATCCTCCTGCGCTCGTATATTTAAGGGAGGTACTGCACAAGTGAGGTTTCAACCACGACTGGGACAACTACTGGCAGCAGCTTCTGATAAAGTTGTGTCAATTTTTGATGTTGAAACTAACAGTCAAATGTACTCATTCCagGGTCATCCTGAACTGGTCAACTATATATGCTGGGATGCAAATGGAGAAGTCTTGGCCTCTGTGAGTCAAAACTTGGTGAAGATTTGGTCAATGACCTCGGGAGAATGCATTCAGGAGCTGAGCTCCAATGGAAACCAGTTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGGTTGGAGGGCTTTCTTCTTTCGAGTTGTGGAACATGGCAGATAATAAGAGCATGACGATTCCAGCTCATGAAAATATAGTATCTGCTTTGGCTCAATCTCCGGTCACCGGAATGGTTGCTTCAGCTAGTCATGACAGTTCTGTAAAGTTGTGGAAATAA 918 0.4194 MYSGKAPLTIFFISGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNLQTQSTPEEHKLVITDVRFRPNSSQLATASVDKSVRLWDAANPSYCLQEYSGHSSAVMSLDFHPKKTDLFCFCDTDNEIRYWNITSSSCARIFKGGTAQVRFQPRLGQLLAAASDKVVSIFDVETNSQMYSFQGHPELVNYICWDANGEVLASVSQNLVKIWSMTSGECIQELSSNGNQFHSCVFHPSYSTLLVVGGLSSFELWNMADNKSMTIPAHENIVSALAQSPVTGMVASASHDSSVKLWK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0700 305 PRINTS G protein beta WD-40 repeat signature 43 57 IPR020472 -
Sto6g0700 305 PRINTS G protein beta WD-40 repeat signature 85 99 IPR020472 -
Sto6g0700 305 PRINTS G protein beta WD-40 repeat signature 292 305 IPR020472 -
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 66 98 - -
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 151 IPR001680 GO:0005515
Sto6g0700 305 SUPERFAMILY WD40 repeat-like 22 305 IPR036322 GO:0005515
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 24 59 - -
Sto6g0700 305 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 15 305 - -
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 145 - -
Sto6g0700 305 Gene3D - 19 159 IPR015943 GO:0005515
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515
Sto6g0700 305 CDD WD40 28 305 - -
Sto6g0700 305 SMART WD40_4 102 142 IPR001680 GO:0005515
Sto6g0700 305 SMART WD40_4 17 56 IPR001680 GO:0005515
Sto6g0700 305 SMART WD40_4 145 181 IPR001680 GO:0005515
Sto6g0700 305 SMART WD40_4 266 305 IPR001680 GO:0005515
Sto6g0700 305 SMART WD40_4 184 222 IPR001680 GO:0005515
Sto6g0700 305 SMART WD40_4 59 98 IPR001680 GO:0005515
Sto6g0700 305 SMART WD40_4 225 264 IPR001680 GO:0005515
Sto6g0700 305 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 15 305 IPR044716 GO:0003714
Sto6g0700 305 ProSitePatterns Trp-Asp (WD) repeats signature. 43 57 IPR019775 -
Sto6g0700 305 Gene3D - 160 305 IPR015943 GO:0005515
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 98 IPR001680 GO:0005515
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 24 65 IPR001680 GO:0005515
Sto6g0700 305 Pfam WD domain, G-beta repeat 29 56 IPR001680 GO:0005515
Sto6g0700 305 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Sto6g0700 305 Pfam WD domain, G-beta repeat 105 142 IPR001680 GO:0005515
Sto6g0700 305 Pfam WD domain, G-beta repeat 187 222 IPR001680 GO:0005515
Sto6g0700 305 Pfam WD domain, G-beta repeat 61 98 IPR001680 GO:0005515
Sto6g0700 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 231 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0700 Sto-Chr6 7315558 7318904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0700 42 292 U-box Gene Family AT2G33340 27.027 1.90e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0700 - - tcc:18612797 534.258