Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0666 atgCACCGACGCCCCTGGAGCATACGCAATTACACGGCAAGAAGGAATTTGGGTTTCTTCTCTTGCGGGTCAGGAAATCCAATCGACGACTGCTGGCGGTGTGACCGGCGCTGGTACCTCCGCCGGAAGCACTTAGCTGATTGTGCAATCGGCTTCGGACGCAACGCCATCGGCGGGCGAGACGGCAAGTACTACGTCGTGACCGACCCGAACGACGACGACCCGGTCAACCCAAGACCCGGCACCCTTCGCCACGCGGTCATCCAAGACAGACCCTTATGGATTGTGTTCAAAAGGGACATGGTGATCACTCTGAAGCAAGAGCTTATAATGAATAGCTTTAAGACCATTGATGGTCGTGGTGTGAATGTGCATATTGCCTATGGGGCTTGTATTACTATCCAATACATCACTAATGTCATCATCCATGGCTTGCATATCCATGACTGTAAGCCCACTGGTAACGCAATGGTTCGTAGCTCGCCCACACATTATGGATGGAGGACTATGGCTGATGGGGACGGAATTTCCATCTTTGGTTCAAGTCACATTTGGATTGATCACAATTCACTGTCTAATTGCGCAGATGGCCTTGTTGATGCTGTAATGGCTTCAACTGCCATTACCATCTCCAACAATTACTTCACCCACCACAATGAGGTTATGCTTTTGGGTCACAGTGACTCTTATGTAAGAGATAAGATGATGCAAGTGACGATTGCCTACAACCATTTTGGGGAGGGCCTTATTCAGAGAATGCCAAGGTGCAGACATGGATATTTCCACGTGGTAAACAATGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCAAATCCCACCATTAACAGCCAGGGCAACAGATACCTTGCCCCTCAAAATGCTTTTGCTAAGGAGGTGACAAAGAGGGTTGACACAGCATCAGGCATATGGAGAAGTTGGAACTGGAGATCAGAGGGAGACCTTTTGCTAAATGGAGCCTTCTTTACATCCTCAGGAGCCGGAGCTGGAGCAAGCTATGCTAGAGCTTCCAGCTTAGCCGCCAAATCATCTTCTCTGGTTGGTGTTCTTACCTCAGGTTCTGGTGTTCTTAACTGCCGCAGAGGCTCTACCTGTTAA 1125 0.4916 MHRRPWSIRNYTARRNLGFFSCGSGNPIDDCWRCDRRWYLRRKHLADCAIGFGRNAIGGRDGKYYVVTDPNDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMASTAITISNNYFTHHNEVMLLGHSDSYVRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPQNAFAKEVTKRVDTASGIWRSWNWRSEGDLLLNGAFFTSSGAGAGASYARASSLAAKSSSLVGVLTSGSGVLNCRRGSTC 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0666 374 PANTHER PECTATE LYASE 9 371 - -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 48 65 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 316 340 IPR018082 -
Sto6g0666 374 PRINTS Pollen allergen Amb family signature 345 368 IPR018082 -
Sto6g0666 374 Gene3D - 25 367 IPR012334 -
Sto6g0666 374 SMART amb_all 100 297 IPR002022 -
Sto6g0666 374 PANTHER PECTATE LYASE 18-RELATED 9 371 IPR045032 GO:0030570
Sto6g0666 374 SUPERFAMILY Pectin lyase-like 7 368 IPR011050 -
Sto6g0666 374 Pfam Pectate lyase 109 289 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0666 Sto-Chr6 7013851 7016482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0666 7 374 Polysaccharide Lyase AT4G13710 82.337 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0666 K01728 - gmx:100809277 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0666 6 7013851 7016482 Sto6g0666 6 7013851 7016482 ECH