Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0635 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGACGCTTTATTACGTGCTTATGTCAAACAATATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCCCTTAACAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAAAACTACCTCAAACCTGGCATCAAGAAGGGATCTCTCACTGAAGAAGAACAGCGTCTCGTTATCCGCCTTCAAGCAAAACACGGCAACAAATGGAAGAAAATAGCTGCAGAAGTCCCGGGTCGTACTGCTAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAGAGGGAAAAAAAGGAGAACAACAAAACAGTTGATCCAATTGACGACACCAAGTACGATCATATACTTGAGACTTTTGCTGAGAAGCTTGTTAAAGAACGGCCTTCCCCATCCTATCTCATGGCTGCTTCTAATGGAGCCTTTATTCACTCTGATGCACCAGCCCCTTCATCAGCCTTACTTCCTCCATGGCTTTCAAATTCCAATACCACCACAGCTATTAGGCCACCTTCCCCTTCTGTGACACTAAGTCTCTCTCCCTCAACAGTTGCAGCAGCACCACCTCCTCCATTTCAGTGGTTACAATCTGAGAGACCCCCGCCGGAGAATGCCCCTCTTGTTATAGCTTTTGGTGATAACATGCTTGTGTCTGACTTAGTTGAGTGTTGTAAAGAGTTGGAAGAAGGGCACCGGGCGTGGTCATCACATAGGAAGGAAGCAGCATGGAGGTTAAGGAGGGTGGAGCTTCAGTTAGAATCAGAGAAAGCGTGTCGAAGGAGGGAGAAGATGGAAGAGATCGAGGCGAAGATTAAAGCTCTGAGGGAAGAACAGAAAGCAGCTTTGGATAGAATTGAAGCAGAATACAGGGAGCAGCTAGCTGGACTGAGAAGAGATGCAGAAACCAAAGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAGCACTTGAGGCTTAGTAAGTTTCTGGAGCAGATAGGGTGCAGACCCAGGCTTCCTGAACCAAATGGAAGATGA 1053 0.472 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKENNKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHSDAPAPSSALLPPWLSNSNTTTAIRPPSPSVTLSLSPSTVAAAPPPPFQWLQSERPPPENAPLVIAFGDNMLVSDLVECCKELEEGHRAWSSHRKEAAWRLRRVELQLESEKACRRREKMEEIEAKIKALREEQKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLSKFLEQIGCRPRLPEPNGR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0635 350 Pfam Myb-like DNA-binding domain 7 68 - -
Sto6g0635 350 Gene3D - 4 58 - -
Sto6g0635 350 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 350 - -
Sto6g0635 350 PANTHER TRANSCRIPTION FACTOR AS1 1 350 IPR031055 GO:0005634|GO:0006351|GO:0010338
Sto6g0635 350 Coils Coil 277 319 - -
Sto6g0635 350 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Sto6g0635 350 CDD SANT 6 53 IPR001005 -
Sto6g0635 350 Gene3D - 62 122 - -
Sto6g0635 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Sto6g0635 350 SMART sant 3 55 IPR001005 -
Sto6g0635 350 SMART sant 58 106 IPR001005 -
Sto6g0635 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Sto6g0635 350 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Sto6g0635 350 CDD SANT 63 104 IPR001005 -
Sto6g0635 350 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0635 Sto-Chr6 6701733 6702818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0635 1 341 MYB Transcription Factor Family AT2G37630 69.697 6.24e-171 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g0635 Myb_DNA-bind_6 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0635 K09422 - jre:108984614 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2391 1 31726074 31727018 Sto6g0635 6 6701733 6702818 CCT
Sto6g0635 6 6701733 6702818 Sto6g0635 6 6701733 6702818 ECH