Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0618 ATGGTAGGAAGGAAGCTTTATGGGAAAGACGTTAATTTTAAAACCCAAGTCATTCCTTCTGGCTTCCTCCCTAGACCTCCCAATAAGCTTCGTTTTCACCATAATGTCAGTCTCACTGTCTCTCTTTCTGTGGGTTCTCCTCCTCAGAATGTCTCCATGGTCATCGACACAGGAAGCGAGCTCTCATGGCTACGTTGTAACCAAACTCATCCGGTTCTACCCACCTACTTCGACCCGACCCGTTCTTCTTCTTATTTCCCCATTCCTTGCTCCTCCTCCACCTGCACCACCCGGACCCGAGACTTTCCCATACCCGCTTCATGCGATTCCAACATGCTCTGTCACGCTACTCTCTCTTACGCCGATTCATCCTCCACCGAAGGGAACCTCGCCTCCGACACATTCCGGGTCGGAGGGTCCGACGACCCTGGAGTTGTGTTCGGGTGTATGAATTCGAGTATTGACAGTTCCGGGTCCGATGCGGACTCCAACACCACCGGGTTAATTGGTATGAACCGTGGGTCGCTCTCCTTCGTCTCGCAGTTGAATTTCTCCAAGTTTTCTTACTGTATCTCGGATTCGGATTTCTCCGGGGTTTTACTTCTCGGGGACACCAATTTCTCGTGGCTCGCCCCGCTAAATTATACTCCTATGGTGCAAATATCGACTCCGTTGCCGTACTTTGATCGTGCCGCTTACACCGTCCCGTTACGGGGAATCAAAGTATCGGGTAAGCTTCTGCCCATATCCGAGTCCGTGTTTGTTCCGGATCACACCGGGGCGGGTCAGACCATGGTTGACTCGGGCACCCAATTTACATTCTTATTGGGTCCGGCTTACACGGTGTTAAGAAGCGAGTTCTTGAACCAAACGAATGCGACGTTACGGGTTTTGGATGATCCGAACTTCGCTTTCCAAATTGCTATGGATTTGTGCTACCGGGTACCCAAGACCCAAACGAAATTACCTGAATTGCCACACGTTAGTTTGGTTTTTGATGGGGCGGAGATGAAGGTTTCGGGTGAGCAACTTCTGTATCGGGTTCCAGGTCAATTCGCGGGTAATGATTCGGTGTATTGTTTCACGTTTGGGAATTCGGATCTTCTAGGTGTGGAGGCGTTCATCATTGGTCATCTCCAACAGCAAAACTTCTGGATAGAGTTTGATCTTGCGAAATCAAGGATTGGATTGGCCCACGTAAGTTGTGGGTCCGTGGGCCGGAGGCTTGGATTGGGAAAGTAG 1242 0.504 MVGRKLYGKDVNFKTQVIPSGFLPRPPNKLRFHHNVSLTVSLSVGSPPQNVSMVIDTGSELSWLRCNQTHPVLPTYFDPTRSSSYFPIPCSSSTCTTRTRDFPIPASCDSNMLCHATLSYADSSSTEGNLASDTFRVGGSDDPGVVFGCMNSSIDSSGSDADSNTTGLIGMNRGSLSFVSQLNFSKFSYCISDSDFSGVLLLGDTNFSWLAPLNYTPMVQISTPLPYFDRAAYTVPLRGIKVSGKLLPISESVFVPDHTGAGQTMVDSGTQFTFLLGPAYTVLRSEFLNQTNATLRVLDDPNFAFQIAMDLCYRVPKTQTKLPELPHVSLVFDGAEMKVSGEQLLYRVPGQFAGNDSVYCFTFGNSDLLGVEAFIIGHLQQQNFWIEFDLAKSRIGLAHVSCGSVGRRLGLGK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0618 413 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 53 64 IPR001969 GO:0004190|GO:0006508
Sto6g0618 413 Gene3D Acid Proteases 33 203 IPR021109 -
Sto6g0618 413 PRINTS Pepsin (A1) aspartic protease family signature 44 64 IPR001461 GO:0004190|GO:0006508
Sto6g0618 413 PRINTS Pepsin (A1) aspartic protease family signature 264 275 IPR001461 GO:0004190|GO:0006508
Sto6g0618 413 PRINTS Pepsin (A1) aspartic protease family signature 374 389 IPR001461 GO:0004190|GO:0006508
Sto6g0618 413 PANTHER ASPARTYL PROTEASE-RELATED 21 411 IPR001461 GO:0004190|GO:0006508
Sto6g0618 413 SUPERFAMILY Acid proteases 39 403 IPR021109 -
Sto6g0618 413 Pfam Xylanase inhibitor N-terminal 40 204 IPR032861 -
Sto6g0618 413 Gene3D Acid Proteases 207 406 IPR021109 -
Sto6g0618 413 Pfam Xylanase inhibitor C-terminal 232 397 IPR032799 -
Sto6g0618 413 PANTHER ASPARTIC PROTEINASE PCS1 21 411 - -
Sto6g0618 413 CDD pepsin_A_like_plant 39 402 IPR034161 -
Sto6g0618 413 ProSiteProfiles Peptidase family A1 domain profile. 38 398 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0618 Sto-Chr6 6542306 6545320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0618 39 407 Miscellaneous Gene Families AT1G44130 23.604 1.17e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0618 - - vvi:100251125 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0618 6 6542306 6545320 Sto6g0618 6 6542306 6545320 ECH
Sto6g0618 6 6542306 6545320 Sto12g0140 12 881806 882879 ECH
Sto6g0618 6 6542306 6545320 Sto7g1269 7 10943041 10944506 ECH