Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0606 ATGGAGTTGAATCCTCAAGAAACAGAGAAATTAGGAGGTGATTGTGCAGAAACTAGATTATACAATTGTGGGTTTTGCAAGAAAGGATTTTCAAATGCTCAAGCTCTGGGAGGTCACATGAACATCCATAGAAGAGACAGAGCCAAGCTCAAGCAATTATCTTCTAATTCCGAAGAAGAGAAAGTTTTGTTTCAATTGTATTCTGGTGATGAAGACAAAAATTACAGTACAGATCTTCATAAAAagGACAAGAAGATTGAAATAATAGATCTTGAGCTTCGGTTAGGTCTTCAACCACACCAACTTTGA 309 0.3625 MELNPQETEKLGGDCAETRLYNCGFCKKGFSNAQALGGHMNIHRRDRAKLKQLSSNSEEEKVLFQLYSGDEDKNYSTDLHKKDKKIEIIDLELRLGLQPHQL 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0606 102 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Sto6g0606 102 PANTHER OS07G0101800 PROTEIN 7 60 - -
Sto6g0606 102 SUPERFAMILY beta-beta-alpha zinc fingers 18 47 IPR036236 -
Sto6g0606 102 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 60 - -
Sto6g0606 102 Gene3D Classic Zinc Finger 7 88 - -
Sto6g0606 102 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0606 Sto-Chr6 6474413 6474799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0606 16 101 C2H2 Transcription Factor Family AT3G53820 37.500 4.83e-18 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto6g0606 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0606 - - jre:109010011 87.8113