Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0605 atggCAGACCTCACAATTTTGGATCCACTTCCAGCCCTCACCCAACTCCACGCAGGGAGATGGAACCAGGGTACGTTGCAGAATCAGATTGCTCCAACAATGGAAGAGGAAGGTGATGATCAATATTGGATGTGGACAAAGAGAAAGCAGTGTTTGAGCTCAATCCTTCTTGCATCATCAACACCAACACCACAATTTATCATGAATTCCTCGTACTCATCATCATCGTATTCTTCATGGGAAGAACAAGCTTTTGCTGAAGATGGTCGTGTTGGTGGATGCACATGGCCTCCTACTTCATACTCTTGCACCTTTTGCAATAGAGAGTTCAAATCAGCCCAAGCTCTTGGTGGCCACATGAATGTTCATAGAAGAGATAGAGCTATGCTCAAGCAATCCCCAACCACTCCTCCTCctcacactcacactcacaataataataagaataatattcatcaattattCATCAATCTTCCTTCTTTAAACTCTACTACTACTATTATTAACCCTAATTCTTCTTCTAAGCTTCAATTAGCTCCTCCAAATCCAATAATGTCATCAAACTTGGATCTTAGAGTTGATCAGCATAAGAGGAGAAGAATCACTACTGCGGATGATCATACTTCTTCATCAACTCCATTATTCTTCACAAAATCGATTTCGGTCGATGATCATCATCTTCGTCGTCGTCATCATATCAGGTCTCGATCGACGTTGGAGGTTATTAGCCCTAGCTCCATTGATGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCATAGTGCTCCCAATTAA 792 0.4003 MADLTILDPLPALTQLHAGRWNQGTLQNQIAPTMEEEGDDQYWMWTKRKQCLSSILLASSTPTPQFIMNSSYSSSSYSSWEEQAFAEDGRVGGCTWPPTSYSCTFCNREFKSAQALGGHMNVHRRDRAMLKQSPTTPPPHTHTHNNNKNNIHQLFINLPSLNSTTTIINPNSSSKLQLAPPNPIMSSNLDLRVDQHKRRRITTADDHTSSSTPLFFTKSISVDDHHLRRRHHIRSRSTLEVISPSSIDEELDLELRLGHSAPN 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0605 263 Gene3D Classic Zinc Finger 97 154 - -
Sto6g0605 263 PANTHER OS07G0101800 PROTEIN 69 260 - -
Sto6g0605 263 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Sto6g0605 263 Pfam C2H2-type zinc finger 101 125 - -
Sto6g0605 263 PANTHER CHAIN A, NMR STRUCTURE OF THE SINGLE QALGGH ZINC FINGER DOMAIN FROM ARABIDOPSIS THALIANA SUPERMAN PROTEIN 69 260 - -
Sto6g0605 263 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Sto6g0605 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Sto6g0605 263 SMART c2h2final6 101 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0605 Sto-Chr6 6458988 6465397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0605 48 137 C2H2 Transcription Factor Family AT5G06070 55.914 2.78e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto6g0605 zf-C2H2_6 1.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0605 - - ghi:107898838 134.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0605 6 6458988 6465397 Sto6g0605 6 6458988 6465397 ECH