Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0563 ATGGAAGTCGACGAAACTCCCATCGTCGAACACGACGCCGCCGGCGACGGTGCTGGTGGCGCTGAAGGCGGAAGTGGCGACGAGGGTTTGTCGACGGGGTTAGGCGACGGAGGTGGAAGTAGCTCCAACGGCACCAGAGACAGAGTGAAAGGGCCCTGGTCTCCGGAGGAGGACGCGATACTGAGTCGCCTCGTCAGCAAGTTCGGCGCCAGAAATTGGAGCTTAATTGCTCGTGGGATCGCAGGAAGATCCGGCAAATCTTGTCGCCTCCGCTGGTGTAATCAGCTCGACCCAGCTGTCAAGAGGAAGCCCTTTACTGAGCCTAACAAAAGACAGTTCATTTCAGATGAGGAGGACCGGATCATAGTTGCAGCACATGCAGTCCATGGGAATAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCATTGGAATTCCACTTTGAGGCGCCGGGGAGTGGAAGTTGAAAAGGCCAAGTTAGATTCTTGCTACATGGTGGAAGATGTTAGCTTGGACAAAGCAAAAGCATCATCTGAAGAAACTCTGTCATGCGGGGATGTCAATTCCTTCAGATCCTCAGATGGAAGAGATGCCAGTTCTGTGGATATTATGGATGATAAATATGAAGACAAAGCACAGATAGAGGGTCAATTAAACCATGAAATCAAGGATCCAACTACCCTTTTCCGACCACTAGCGCGAGTCAGTGCTTTTAGTGTATATAATTCAGTGGATGGTTCACAGCCTGCAACGTCAATTCAAAGGCCAGTTCCAATGCAAGGACCTCTTTATCAAGCATCAAAACCAGGCATTGAAATTTGTAAAATGCTGGAAGGAATTTATGGTTGTGACCAATCTGTGCCTCATCAGTGTGGCCATGGTTGTTGTGCTGCTCCAAATGGGGAAAAATCCAAAAGCTCTTTGTTGGGACCAGAATTTGTTGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTAGCAGCAATAGCTACTGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGATTCAACTGGCAGGGAATGGCATAAGCATGACGACTATTGTAATGTCATCCTGTTTTGCCTGGGAAATGGACTTGGGAGACTATCTGTGGAGGATCTGCTACTGGGTATATGA 1197 0.477 MEVDETPIVEHDAAGDGAGGAEGGSGDEGLSTGLGDGGGSSSNGTRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTEPNKRQFISDEEDRIIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEVEKAKLDSCYMVEDVSLDKAKASSEETLSCGDVNSFRSSDGRDASSVDIMDDKYEDKAQIEGQLNHEIKDPTTLFRPLARVSAFSVYNSVDGSQPATSIQRPVPMQGPLYQASKPGIEICKMLEGIYGCDQSVPHQCGHGCCAAPNGEKSKSSLLGPEFVEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDSTGREWHKHDDYCNVILFCLGNGLGRLSVEDLLLGI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0563 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 100 IPR017930 -
Sto6g0563 398 ProSiteProfiles Myb-like domain profile. 106 156 IPR001005 -
Sto6g0563 398 PANTHER - 16 362 - -
Sto6g0563 398 SMART sant 110 158 IPR001005 -
Sto6g0563 398 SMART sant 49 98 IPR001005 -
Sto6g0563 398 Gene3D - 49 101 - -
Sto6g0563 398 PANTHER MYB PROTEIN-RELATED 16 362 - -
Sto6g0563 398 CDD SANT 115 156 IPR001005 -
Sto6g0563 398 Pfam Myb-like DNA-binding domain 115 155 IPR001005 -
Sto6g0563 398 Pfam Myb-like DNA-binding domain 50 96 IPR001005 -
Sto6g0563 398 MobiDBLite consensus disorder prediction 1 53 - -
Sto6g0563 398 CDD SANT 52 94 IPR001005 -
Sto6g0563 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 160 IPR017930 -
Sto6g0563 398 Gene3D - 115 159 - -
Sto6g0563 398 ProSiteProfiles Myb-like domain profile. 45 96 IPR001005 -
Sto6g0563 398 SUPERFAMILY Homeodomain-like 47 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0563 Sto-Chr6 6072307 6074868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0563 39 366 MYB Transcription Factor Family AT3G09230 52.367 1.74e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g0563 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0563 K09422 - gmx:100811740 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0563 6 6072307 6074868 Sto6g0563 6 6072307 6074868 ECH