Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0548 ATGCTTCAGATTCGGCTAAGTAAGTTGCCTGCCCCAGAAGGTTCAGCAGGGGCAAGGCCTTCACCTGTTGAGACTGCTATTGCATGCCCTGACCATCTAGTCCTTGCTGATCTTCCTGTAGCCAAGGGCATAGGTGCAGCCACTACTACTTCCCTTGTTAAGACTCTAGGTCGGAGGTCCCGCCGCCAGCTTGGTGAGCGAGTTCATTTCTGTGTTCGTTGTGATTTCCCTATAGCTATATATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTGGATTGTGCTAGAAGTGACTCATTGTGCTACCTGTGCGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCTTTGTTTGTGCTGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGGATGAATTTGAATCTCACATCCAACACAACCATGCTGACCTTCTTCGGCCCAATGCAGATAGGGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCATCAGAGTCCACTGCTCGAGGTCCCCAGAGGCCAGTATTTTCTCCTGGTTCAAATTCCCAGCTCCATGATTGGGAAGACAAAAGTCGTCGACAGCCTATGAGAGAGCAGCCCCCTTCAAGGTCAATGCAACAGCAAAAGCCACCATTTTATGGTCAAGGTCAAAATCTCCATTCAGATCCTCAATCTGGCCCTACCGGAGCTATTCAACAAGGCTTCAATCCACAAAGTTTTGACATGCAGCGTGGTCAACGTGAACCCTCCCATTTTGTTGAGAGACAGCAAGGAGTTGCTCCAGAAACCTCATTTCCTGATTATCAATCCATGCATTCTCCCCAGCCACCCAATTTTGCTGTGCCAATTAATCCAAACTCAATGATGAACCCTCCTATGCCATTTGCCTATCCCCCTTACCCTCATGAGGGAGCTCAGCCATTTTATGCTGCTCCATATGATATGCCTAGGCAGGACTCATCTTCTGAAATAGGTGTAGAACAGGGTTCATTACTGGGTTACCCTCCAGGTCCGGCCAGTGGCCcaaattttccaacaaattatCCCCAGCCCTGGAATGCAGGAATGACCAGTGTGCCTTTTGATCAAGCTCAAGGTGGTATGATTATGGATCCGAGGGATGCCAAAGGTATGTAG 1167 0.4764 MLQIRLSKLPAPEGSAGARPSPVETAIACPDHLVLADLPVAKGIGAATTTSLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGIFVCAAPHCLKSFLKKDEFESHIQHNHADLLRPNADREDGNESEAQSVRQSTASESTARGPQRPVFSPGSNSQLHDWEDKSRRQPMREQPPSRSMQQQKPPFYGQGQNLHSDPQSGPTGAIQQGFNPQSFDMQRGQREPSHFVERQQGVAPETSFPDYQSMHSPQPPNFAVPINPNSMMNPPMPFAYPPYPHEGAQPFYAAPYDMPRQDSSSEIGVEQGSLLGYPPGPASGPNFPTNYPQPWNAGMTSVPFDQAQGGMIMDPRDAKGM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0548 388 MobiDBLite consensus disorder prediction 364 388 - -
Sto6g0548 388 MobiDBLite consensus disorder prediction 165 194 - -
Sto6g0548 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 375 - -
Sto6g0548 388 CDD RING-HC_HAKAI_like 69 105 IPR040380 -
Sto6g0548 388 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Sto6g0548 388 MobiDBLite consensus disorder prediction 208 255 - -
Sto6g0548 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 122 IPR013083 -
Sto6g0548 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 148 IPR013087 -
Sto6g0548 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 375 IPR040383 GO:0016567|GO:0061630
Sto6g0548 388 MobiDBLite consensus disorder prediction 149 267 - -
Sto6g0548 388 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Sto6g0548 388 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0548 Sto-Chr6 5957408 5959498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0548 1 366 C2H2 Transcription Factor Family AT5G01160 51.733 3.68e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0548 K15685 - gmx:100817582 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0548 6 5957408 5959498 Sto6g0548 6 5957408 5959498 ECH