Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0544 ATGATAGTTTCTATGGACTTGAATGCCTCACCGGTCCCGGAGGAAGATGAGGACACTTTTGAGGGGCACGTAGAAGAAGAGTACACTACACGAGAAGAACGTGTAGAAACTGCTGTTGATATAGCACGCCGGgagCGCGAGGAAAGAAAAAGACGATTGAAAAGAGAACGTCCAGATGACAGACCTGTGCATGTATCACAGTCTGCTGGGTATGATCAGCTGTATCAAACGAAGATCCTTAAAACATATGATAAAAGTAGACTTCCTCCAGGGTGGTTGGATTGCCCTTCCTTTGGTCAGGAAATATTTTGCATGATACCTTCTAAGGTTCCGCTTAGTGAATCATTCAATGATTGTATTGCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACACCAACAAAGAGTTTTAGGGAGAAAGCTTGGTTTGGTGATTGATTTGACCAATACTTCTCGATATTATCCAGTATCCGACCTAAAGAAAGAGGGTATCAAGCATGTAAAGATACAATGCAAGGGGCGTGATTCTGTACCTGATAATTTATCTGTGAATCAATTCGTAAATGAGGTTACACAATTTCTATCACGTCAAAAACACTCAAAGAAATATATACTTGTCCACTGTACGCATGGCCATAATCGCACAGGATACATGATCATCCATTATCTTATGCGTGCTATGTCAATGTCTGTCACTCAGgcaataaaaatattttctgaAGCCCGTCCTCCTGGAATCTACAAGCCTGATTACATTGATGCATTATACACATTTTATCATGAAAAAAAGCCTGAAATGGTGGTTTGTCCTCCTACTCCAGAGTGGAAGAGATCTTCTGAATTTGATCTTAATGGTGAAGCACtgccagatgatgatgatgatggagtaCCTGGCCCACCTTTGGATGAGAACCATGAGACAGATGCAATAATGACAAATGATGATGTCTTGGGAGATGAGATACCTAGCGATCAACAAGATGCATTCCGGCAGTTCTGTTATCAATCACTCAAATTGGGTGCAGGGGCTAGAGGACATACACAATTTCCAGGGTCGCACCCAGTTTCTCTGGACAGggaaaatttgcagTTGTTACGGCAGCGTTATTATTATGCAACATGGAAAGCTGATGGAACTCGATATATGATGCTAATAACTATGGATGGATGTTACTTAATTGATAGAGGCTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCGTGTAGGGGCACAAATGATGTTTTGGCTGAGAAGACTCATCACTACACATTACTTGATGGGGAGATGATTATTGATACATTGCCTGATTCACAGAAGCAGGAGAGGAGATACcttatatatgatatgatagcAATTAATCAAGTATCAGTAATAGAGCGACCTTTTTATGAAAGGTGGAAAATGCTTGAGAAAGAAGTGATAGAACCTAGGAATTACGAGCGACATAATATATACCAGAGCAGAAACCCATACTATAGATATGACATGGAACCATTCAGGGTGAGGAGGAAAGACTTCTGGTTGCTCTCTACTGTCAGAAAGCTTTTAAAAGAATTCATTCCGAAACTCTCGCACGATGCTGATGGCCTCATATTTCAGGGGTGGGATGATCCTTATGTACCACGCACTCATGAAGGCCtcttaaagtggaaatatgctGAACTGAACTCGGTTGATTTTCTCTTTGAGATTGATGGTGATTGTCAAAAACTTTTTCTCTATGAACGAGGAAAGAAGAAACTCATGGAAGGGCACAGCGTAGCATTCAGAGATGGTTCAGATCCCTTACTTTATTCTGGAAAGATCATAGAATGTGCTTGGGATTCTAATGAACAGGAATGGATATTCCACCGAGTCAGAACAGATAAATCGACTCCAAATGACTTCAATACTTTTAAGAAGGTGATGCGAAGTATCAGAGACAATATTACAGAGGAAGATTTGTTGAATGAGATAGATGAGATTATTCGCCTCCCCATGTATGCTGACAGGATAAGAATTGATAGTAAAGCGCACCATCATACTAACGCGGCACGTAGAAGGTGA 2049 0.3904 MIVSMDLNASPVPEEDEDTFEGHVEEEYTTREERVETAVDIARREREERKRRLKRERPDDRPVHVSQSAGYDQLYQTKILKTYDKSRLPPGWLDCPSFGQEIFCMIPSKVPLSESFNDCIAPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLSVNQFVNEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEALPDDDDDGVPGPPLDENHETDAIMTNDDVLGDEIPSDQQDAFRQFCYQSLKLGAGARGHTQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFNFRRVQMRFPCRGTNDVLAEKTHHYTLLDGEMIIDTLPDSQKQERRYLIYDMIAINQVSVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDMEPFRVRRKDFWLLSTVRKLLKEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYAELNSVDFLFEIDGDCQKLFLYERGKKKLMEGHSVAFRDGSDPLLYSGKIIECAWDSNEQEWIFHRVRTDKSTPNDFNTFKKVMRSIRDNITEEDLLNEIDEIIRLPMYADRIRIDSKAHHHTNAARRR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0544 682 CDD Adenylation_mRNA_capping 343 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Sto6g0544 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 207 217 IPR016130 GO:0016311|GO:0016791
Sto6g0544 682 Gene3D - 592 659 IPR012340 -
Sto6g0544 682 SMART dsp_5 122 262 IPR020422 GO:0006470|GO:0008138
Sto6g0544 682 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 682 - -
Sto6g0544 682 MobiDBLite consensus disorder prediction 24 63 - -
Sto6g0544 682 Gene3D Protein tyrosine phosphatase superfamily 63 283 IPR029021 -
Sto6g0544 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 266 IPR020422 GO:0006470|GO:0008138
Sto6g0544 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 553 - -
Sto6g0544 682 Pfam mRNA capping enzyme, C-terminal domain 557 650 IPR013846 -
Sto6g0544 682 Gene3D DNA ligase/mRNA capping enzyme 313 552 - -
Sto6g0544 682 Pfam Dual specificity phosphatase, catalytic domain 140 260 IPR000340 GO:0008138|GO:0016311
Sto6g0544 682 SUPERFAMILY Nucleic acid-binding proteins 555 666 IPR012340 -
Sto6g0544 682 MobiDBLite consensus disorder prediction 1 65 - -
Sto6g0544 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Sto6g0544 682 MobiDBLite consensus disorder prediction 283 307 - -
Sto6g0544 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Sto6g0544 682 PIRSF mRNA_capping_HCE 74 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
Sto6g0544 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 185 254 IPR000387 GO:0016311|GO:0016791
Sto6g0544 682 CDD RNA_5'-triphosphatase 91 257 - -
Sto6g0544 682 PANTHER MRNA-CAPPING ENZYME 3 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0544 Sto-Chr6 5920858 5930496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0544 1 682 Protein tyrosine phosphatase (PTP) family AT3G09100 69.913 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0544 K13917 - gmx:100776633 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0544 6 5920858 5930496 Sto6g0544 6 5920858 5930496 ECH