Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0518 ATGCGAAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATTCAGCTCGCCAATACCCTAGCATCTGATTATCCTAGAGACCGCGATGGGACTTGCTTTCAGATGAGATTGTCCTACAGTCCAGCTGctcattttttccttttactgGTTCAGTGGACTGATTGTCACCTTGCTGGAGCCTTGGGATTGCTCAGAATTCTCATATACAAGGCTTATAAAGATGGGAAGACAACAAGGTCAGTTTATGAAAGAAAAGCCAGTCTGAAGAATTTTTATGGTGTGATCTTTCCCTCTTTATTGCAACTACAAAGAGGAATCACTGATGTAGAAGATAGGAAACAGAAAGATTTATGTGCTACTAAGTATAAGTCAAAAGATGCAATAAGCCAAGGAAAGATCTCCGAAATTGATATAGAGAGGGAAGAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGGCTGTATTGCCCAAATGCAATCACTCAATGTGCATGAAATGCTACCAAGACTGGTGTGCCCGGTCGCGATCTTGCCCGTTCTGTCGGGAAAGTTTGAAAACAGTTAAACCAGATGACCTATGGATCTATATAAACACAAGTGAGATAGAGGACTTGGCTTCAATCACCAAGGAGAATCTGAAGAGGCTATTTATGTACATTGAAAAGTTGCCTCTCATGGCTCCAGATCATATCTTATTGTCTTATACTCAGTACTGA 723 0.4011 MRKSFKDSLKALEADIQLANTLASDYPRDRDGTCFQMRLSYSPAAHFFLLLVQWTDCHLAGALGLLRILIYKAYKDGKTTRSVYERKASLKNFYGVIFPSLLQLQRGITDVEDRKQKDLCATKYKSKDAISQGKISEIDIEREEECGICMEMNSKAVLPKCNHSMCMKCYQDWCARSRSCPFCRESLKTVKPDDLWIYINTSEIEDLASITKENLKRLFMYIEKLPLMAPDHILLSYTQY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0518 240 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 233 - -
Sto6g0518 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 211 IPR013083 -
Sto6g0518 240 PANTHER RING FINGER PROTEIN 41, 151 1 233 - -
Sto6g0518 240 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Sto6g0518 240 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Sto6g0518 240 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Sto6g0518 240 SMART ring_2 146 183 IPR001841 -
Sto6g0518 240 SUPERFAMILY RING/U-box 133 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0518 Sto-Chr6 5621575 5624866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0518 94 195 C3H Transcription Factor Family AT5G01960 32.710 5.95e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0518 K25840 - pop:7466068 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0518 6 5621575 5624866 Sto1g2278 1 30768449 30771831 CCT
Sto6g0518 6 5621575 5624866 Sto6g0518 6 5621575 5624866 ECH