Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0505 ATGGAAATGTCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTACAGCGCTCGAAGAGCCGGTGTTGTCCGCGCTTTGACTCAAgaTGTGGATGAGTTTTACGGGCTCTGTGATCCAGATAAGGAGAATTTGTGCCTTTATGGACACCCAAATGAAACCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCCCCAGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAATCGCAGGGACTGGCTTTCTCTTGTTGCTGTCCATAGTGATTCATGGCTGCTTTCTGTGGCCTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCAATAAAGGATAAGCCAACCGTGGACAGTGGAAGCAAGTCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAACATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAATGCAGATGAATTTTGGATTGGCTGCGACATCTGCGAGAGGTGGTTCCACGGGAAATGCGTGAAGATTACCCCTGCAAAGGCAGAGAGCATAAAGCAATATAAATGCCCATCCTGCATGAGGAGGGGGAAACCCTAG 717 0.477 MEMSSSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0505 238 MobiDBLite consensus disorder prediction 148 165 - -
Sto6g0505 238 PANTHER CPG BINDING PROTEIN 3 234 IPR045104 GO:0006355|GO:0042393
Sto6g0505 238 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Sto6g0505 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Sto6g0505 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Sto6g0505 238 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 234 - -
Sto6g0505 238 MobiDBLite consensus disorder prediction 140 176 - -
Sto6g0505 238 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Sto6g0505 238 CDD PHD_AL_plant 185 235 IPR044104 -
Sto6g0505 238 Pfam PHD-finger 186 234 IPR019787 -
Sto6g0505 238 SMART PHD_3 185 233 IPR001965 -
Sto6g0505 238 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0505 Sto-Chr6 5511780 5514428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0505 4 232 Alfin-like Transcription Factor Family AT5G05610 79.565 1.92e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto6g0505 Alfin 1.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0505 - - gmx:100793126 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0505 6 5511780 5514428 Sto1g2265 1 30655240 30658583 CCT
Sto1g2299 1 30949100 30949483 Sto6g0505 6 5511780 5514428 CCT
Sto6g0505 6 5511780 5514428 Sto6g0505 6 5511780 5514428 ECH