Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0470 ATGGAAGACAGTGTAACAGAAGGTGAAGGGATGCTTCCTCAGGTGAATCTGAAAGCAGAAGATGAATCCCACGAAGAAAAGGAATATGATGCGGTTCCTACAGCAGACGAAGCTACCATTTTAATTAACTCTCTTGCTAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCCCCCAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCACCAAAGCCATCATCTGGACCCCACAAATCAAGGGAGTGCATGCCTCTCATCCTTATCCTGCGTGACAGATTGAAGTATGCTCTCACCTACAGAGAAGTTATTTCTATCTTGATGCAACGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATATCCTGCTGGATTCATGGATGTTGTATCCATTCCCAAGACCAATGAAAACTTCCGTCTTCTCTATGACACAAAAGGCCGTTTCCGTCTCCACAGTGTTAGGGATGAAGAGGCAAAGTTCAAGCTTTGCAAGGTTCGCAATGTTCAATTTGGACAAAAAGGGATCCCTTACATTAACACCTACGATGGGCGCACCATTCGCTATCCTGATCCGCTTATTAAGGCAAATGACACCATCAAACTGGACTTGGAAACTAACAAGATCACTGAATTCATCAAGTTTGATGTGGGTAATGTGGTAATGGTCACTGGAGGAAGGAACAGAGGTCGTGTTGGTGTCATCAAGAACAGGGAGAAGCACAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACTGGCCATGAGTTTGCTACTCGGATGGGCAATGTGTTCCTTATTGGCAAGGGGACAAAGCCTTGGGTATCTCTTCCCAAAGGCCGTGGTATCAAGTTAACTATCATTGAGGAGGCTAGAAAGAGGCTTTCTGCTCAACAAGAAGCCGCAACAGCTTAA 930 0.457 MEDSVTEGEGMLPQVNLKAEDESHEEKEYDAVPTADEATILINSLARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECMPLILILRDRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRNVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFLIGKGTKPWVSLPKGRGIKLTIIEEARKRLSAQQEAATA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0470 309 MobiDBLite consensus disorder prediction 1 30 - -
Sto6g0470 309 Pfam RS4NT (NUC023) domain 47 83 IPR013843 -
Sto6g0470 309 Gene3D - 166 216 IPR038237 -
Sto6g0470 309 ProSitePatterns Ribosomal protein S4e signature. 52 66 IPR018199 -
Sto6g0470 309 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 265 308 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto6g0470 309 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 46 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto6g0470 309 Pfam Ribosomal family S4e 139 213 IPR013845 -
Sto6g0470 309 Pfam 40S ribosomal protein S4 C-terminus 256 302 IPR032277 -
Sto6g0470 309 PANTHER 40S RIBOSOMAL PROTEIN S4 46 264 - -
Sto6g0470 309 PANTHER 40S RIBOSOMAL PROTEIN S4 265 308 - -
Sto6g0470 309 Gene3D - 219 289 IPR014722 -
Sto6g0470 309 ProSiteProfiles S4 RNA-binding domain profile. 86 148 - -
Sto6g0470 309 Hamap 30S ribosomal protein S4e [rps4e]. 51 282 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto6g0470 309 Pfam S4 domain 87 134 IPR002942 GO:0003723
Sto6g0470 309 Gene3D - 45 161 IPR036986 GO:0003723
Sto6g0470 309 SMART s4_6 86 150 IPR002942 GO:0003723
Sto6g0470 309 Pfam KOW motif 221 254 IPR005824 -
Sto6g0470 309 CDD KOW_RPS4 219 273 IPR041982 -
Sto6g0470 309 SMART kow_9 218 245 IPR005824 -
Sto6g0470 309 CDD S4 86 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0470 Sto-Chr6 5105204 5111400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0470 45 306 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.840 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0470 K02987 - gmx:100500000 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0470 6 5105204 5111400 Sto9g2568 9 28249306 28250839 ECH
Sto6g0470 6 5105204 5111400 Sto6g0470 6 5105204 5111400 ECH