Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0460 ATGATGAAAATTTATGGGAGTTCTGAACAGAGTTGTTTTGTGGGTGGTGGCTGCAGGAACAGGAAATTTCGAAAGAGACGAAGAAGTGGAAGCAACTCTGTTATAGACACTCTTGAAAAGTGGAAGAAGTACAACAGCGAGCTTGAGTTTGTCAAGAATGGAGCGAAGATGGCGAATCACAAAGCTCCGGCGAAGGGCTCGAAGAAGGGGTGCATGAGAGGCAAAGGTGGGCCTCAGAACTCAGATTGCAACTACAGAGGAGTAAGGCAGAGGATTTGGGGCAAATGGGTAGCCGAAATTCGCGAACCGATTAATGGGAATCAGAACAATGTGGGAAACAAGAAACCGAATCGGCTATGGCTCGGCACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGAGCCATGTATGGCCCTTGTGCTCGTTTGAACTTCCCTGACTATAATAtggaacaagaagaagaagacgaagaagaagatgaagaagagccTGCATGCTCTAATGAAGAAACAGAGGAAACAGAGAAGAAGCATGAGGTTATTATggtgaagagagaagaaacaGAGGAGGAATGGAATCCAAGAGGTAATTGTGAGGATTTTAGTGTCATCAGAAGTGAAGCTTCCTTTGGGAAGAAGCAAATGGAGGAAGTGATTTCTGAGATTCTGGAACTTTGTAGCTCTGATCACTCACAAAATGAGAAATACGAAGTTGAAGGCTTGAGCAATTCAGGGCATCATTTGCCTGTGTATCTGAAGAATATGAAAGAGGCAGATCTGGAAGTTTGTTATTATGATTATAGTTTCTTGAGACCTGATTATGACTTTGGCCTTGATGGATCAACCATTTCTGACAATGGACTCTCTTCTTCAAACCCTTTCTTAACCCACCTCACCAAGTCAGGAACTTCCACAGAAGTTGATGTTGTAGGAGACGACTCAGGAGCTTTCCCAAGCTCCGCCCATGAAGCCGCCAGAGGAGGGGTTGTTGCCGGTGATAGTGATGAGGCGGTTGAGGCCGAAGTCGGAGATGTAAGGGTGGAAATCATTGTCAAGGAGGATGTTGGAGGGTTTGACGTCACCATGAACGAACTTTCTTGGACTGCATTCATGGAGATAGGCCAAACCCCTCGCTGTACCTTTGGCAATTCTTAA 1170 0.4316 MMKIYGSSEQSCFVGGGCRNRKFRKRRRSGSNSVIDTLEKWKKYNSELEFVKNGAKMANHKAPAKGSKKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPINGNQNNVGNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNMEQEEEDEEEDEEEPACSNEETEETEKKHEVIMVKREETEEEWNPRGNCEDFSVIRSEASFGKKQMEEVISEILELCSSDHSQNEKYEVEGLSNSGHHLPVYLKNMKEADLEVCYYDYSFLRPDYDFGLDGSTISDNGLSSSNPFLTHLTKSGTSTEVDVVGDDSGAFPSSAHEAARGGVVAGDSDEAVEAEVGDVRVEIIVKEDVGGFDVTMNELSWTAFMEIGQTPRCTFGNS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0460 389 SUPERFAMILY DNA-binding domain 84 152 IPR016177 GO:0003677
Sto6g0460 389 MobiDBLite consensus disorder prediction 156 183 - -
Sto6g0460 389 Pfam AP2 domain 83 143 IPR001471 GO:0003700|GO:0006355
Sto6g0460 389 ProSiteProfiles AP2/ERF domain profile. 84 151 IPR001471 GO:0003700|GO:0006355
Sto6g0460 389 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Sto6g0460 389 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Sto6g0460 389 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 242 - -
Sto6g0460 389 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 20 242 - -
Sto6g0460 389 SMART rav1_2 84 157 IPR001471 GO:0003700|GO:0006355
Sto6g0460 389 Gene3D AP2/ERF domain 84 152 IPR036955 GO:0003700|GO:0006355
Sto6g0460 389 MobiDBLite consensus disorder prediction 156 174 - -
Sto6g0460 389 CDD AP2 83 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0460 Sto-Chr6 5056161 5058636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0460 23 152 AP2-EREBP Transcription Factor Family AT2G40340 54.887 2.16e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto6g0460 AP2 9.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0460 - K09286 lang:109361039 206.453