Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0450 atgcagaagaagaagagtagTGTTCACTATTATTGTTGCCTCTTATTTCTCTCACTATACCTTATTAGTGGAGATGGAGAAAGCTCGATTAATATTCCAGTAGGAGTAATTCTTGATCTGAATTCATCAGTTGGAGCCATGGTGTGGAAGTGCATAACCATGGCACACACAGATTTCTACAACAATTCCAACTATCAAACCAGGCTTTCCCTTCAACCAAGAAATTCTGAGAATGATGTTCTCACCGCTGCTTCTGCAGCTCAGGACCTAATAGTGAATGAAACGGTGCGCGCAATCATAGGACCCCAAAATTCCAAAGAAGCAAGTTTTGTAATAGAAGTTGGGAGCAGATCTAGTGTACCCATCATTTCCTTTTCTCCAACAACTGTATCTCTTTCTCCAACTCACACCaatcaaaatgataattattGCTCTATGTTCAAGGCTATAGCTTCCATCATTGAATCCTATGGATGGCACGAAATCATCCCCATCTATGAAGACACACAATATGGAAATTCCGTATTCATCCCATGTCTCCTACAAGCTCTAGATGCTCTTCAAGAAATGAACACACACTTGCCTTATAAAACAGCCATTAGTGTGAATTCTGGAAAAGATGAGATTGTGAAGGAGCTCATCAAGTTAAAGGGCATGCAAACTAAGGTATTCCTTGCCCACATCACTAATGGTACACTTGGGTCAATCTTTTTCCAACTTGCAGATGAACAAGGGATGATGAAGCAAGGATTTGCTTGGATTGTGACACAATCTGATCCTTCCATCATTGTAGATCCTACGGCTCCCAGAGTGAGTGACTTCATGCAAGGTGCACTGGGAGTGAGGCCATTTGTGGACAACACAAATGAAGAGCTTGAGGATTTCAAGAGAAGATGGAAAGTTGAGTCCAATATTACTAATTTGACCCTCTTGGGATTGTGGGCTTATGACACAGTCCAAGTGCTGGCCACTGCAGTAGAAAATGCTAGTGTAGGGAATTCCGGAGTTGATCTTGCAAATGCAATTTCAAGTGTTGCTTTGAGAGGGCTTTCTGGGAATTTCAGCTTGAAGGAAGGGCAAGTAGGGTCATCCATATTTGAAGTGTACAATGTAATAGGACAAACAGAGAGGATTGTAGGGTATTGGAGCCCCCAAAGAGGACTGGTAAAAAATGTtagtgatgatgataatgagcACAAACTTAAGGGACCAATAATATGGCCAGGTGACACAGAAGTGAAACCACCAAAGTTGAGAATTGGAGTGTTAGTAAGAGAAGGTTCTTTCTCTGCAAAATTTGCGGAAGTAAAATGGGAAAATTCTCCAAATGGTACACCAAATGAAGTTTTTTCTGGTTTTGCTGTTGACTTGTTCAGAGAAGTGGTCGAAGTTTTACCCTTTGGCATGTCTTATGACTTTGTCCGCCTCAATGCCATAAATGAGACCTATGATAGAATTCTATGCCAAATTAAAGAGAAGGCAATTGGGGACATCACAATATCAGAAAATCGCACAAAATGTGTTGATTTCACATTGGCATATATAGCATCAAGTGTGTCAATGGTTGTTGCAAGGAAGGAAAACCTTGGGTCGGTGGAACTCTTGAAACCTTTCGATTGGACTCTTTGGACAATTCTTTCGGCGATCCTTTTGGTTTCAACGTTAACTATAATTTCATTAGAAGTTAGTAAGCACGATGATGATGAGCAGAAGAAGAAAGTGTTCAAGGATATCCTCACCTTTCCCTTCTCTGTTTTCAGTCGCGATCCAGAGAGTAAGGACTGGAAGAGCAGTTTGTCAAAATGGGTGGCGTTTATGTGCTCAATCATCTTTCTAATGGCAGTGCAAATTTATACTGCGAGTTTAACTAATATGTTAGCAGAAGAGGCAGTAAAGCCTAAGCCTCGATTGAAGGACGTACAAGAGATTATAGACAAAAAGTACCATGTGGGATATCAGAATGCATCAGGTGTGAAACAATTTCTGATTCAACAATTACAATTGGATGAGTCTCAATTGAAGGCTTATAGGAGTCCTGAGGAGTATAACCGAGAACTAACACTTAAAACCAAGAATGGAGGTGTGGATGCTATATTCGATGAAACCCCCTATCTCACTACCTTCCTCTCCATTGATGGCTATGATAACTACACCATGGTTGGAACCAAATACCCTTCTCTTGGATTTGCCTTTGCATTTCCACAGAAATCCGGGCTGGTCTCCTACTTCTCGGATGGGATCTTAGAAGTGGTTCAAAATAAAACCACATTTGAAGGGCTTGAGAACAAGTACTCTCTCCACATCACTTCCGACTTCCAAACTAGTGATTCCAATTTTCGACGTTTAAGCATACATGACTTTCTGGGTTTCATTTGGATGGTAGTGGCCATAATAGGTGTGTTTCTTTTGGTTGCTTTTCTTAGAGAGTGCAAGATCAGGTTCCCATGTTTATGTCAGAAATTCAGCTCCTCATCATCACGTGTTTCAAAACAAGCAATGAGTGCATGA 2508 0.4011 MQKKKSSVHYYCCLLFLSLYLISGDGESSINIPVGVILDLNSSVGAMVWKCITMAHTDFYNNSNYQTRLSLQPRNSENDVLTAASAAQDLIVNETVRAIIGPQNSKEASFVIEVGSRSSVPIISFSPTTVSLSPTHTNQNDNYCSMFKAIASIIESYGWHEIIPIYEDTQYGNSVFIPCLLQALDALQEMNTHLPYKTAISVNSGKDEIVKELIKLKGMQTKVFLAHITNGTLGSIFFQLADEQGMMKQGFAWIVTQSDPSIIVDPTAPRVSDFMQGALGVRPFVDNTNEELEDFKRRWKVESNITNLTLLGLWAYDTVQVLATAVENASVGNSGVDLANAISSVALRGLSGNFSLKEGQVGSSIFEVYNVIGQTERIVGYWSPQRGLVKNVSDDDNEHKLKGPIIWPGDTEVKPPKLRIGVLVREGSFSAKFAEVKWENSPNGTPNEVFSGFAVDLFREVVEVLPFGMSYDFVRLNAINETYDRILCQIKEKAIGDITISENRTKCVDFTLAYIASSVSMVVARKENLGSVELLKPFDWTLWTILSAILLVSTLTIISLEVSKHDDDEQKKKVFKDILTFPFSVFSRDPESKDWKSSLSKWVAFMCSIIFLMAVQIYTASLTNMLAEEAVKPKPRLKDVQEIIDKKYHVGYQNASGVKQFLIQQLQLDESQLKAYRSPEEYNRELTLKTKNGGVDAIFDETPYLTTFLSIDGYDNYTMVGTKYPSLGFAFAFPQKSGLVSYFSDGILEVVQNKTTFEGLENKYSLHITSDFQTSDSNFRRLSIHDFLGFIWMVVAIIGVFLLVAFLRECKIRFPCLCQKFSSSSSRVSKQAMSA 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0450 835 Gene3D - 31 149 - -
Sto6g0450 835 SUPERFAMILY Periplasmic binding protein-like I 31 383 IPR028082 -
Sto6g0450 835 PANTHER GLUTAMATE RECEPTOR 32 803 - -
Sto6g0450 835 Gene3D - 411 533 - -
Sto6g0450 835 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 803 - -
Sto6g0450 835 Gene3D - 534 675 - -
Sto6g0450 835 Pfam Receptor family ligand binding region 52 373 IPR001828 -
Sto6g0450 835 Pfam Bacterial extracellular solute-binding proteins, family 3 446 755 IPR001638 -
Sto6g0450 835 SMART GluR_14 417 765 IPR001320 GO:0015276|GO:0016020
Sto6g0450 835 Gene3D - 150 319 - -
Sto6g0450 835 SUPERFAMILY Periplasmic binding protein-like II 414 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0450 Sto-Chr6 4966144 4969510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0450 14 809 Ion Channels AT5G27100 32.599 9.39e-124 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0450 K05387 - gmx:100799966 559.681