Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0447 TTGGGGGCAGCCTTGACGGTTAAGGCTCTTACGGAGCTTTGTGGTAAATATAAGCCTCAGGTAGTTTTCTTAATGGAATCTAGAAGTAAGAAGGACAAGATGGAGCGGTTGAGAAGAAGGTTTCGTTTTCAGTTTGGTCAAGCGTTTTATGTGGATCCTGTGGGCAAGTCTGGTGGTCTTGCTGTCTGGTGGCATGATGATTTGGTgtttaatgttttatttcaCTCCAAGAATTTCATTCATGCTAGGCTTGGCTCTGTGGAAGGGGATGTTCCTTGCTATTTGACTTGTGTTTATGGTCCTCCTTTGGAAGGTGATAGGCATGTGGCCTGGGACAGAATGAGGACTATTAGTAATGGTGTTTCTGGGGCTTGGCTGTACTGCGGTTTGTTTGATCTTGAGTACAAAGGCCCTTTTTTCACTTGGGCTAATAATAGATTGGGAGATGCCCATGTTAAGGAGAAACTGGATAGAGTGCTTGGGAACTTGGACCTGCTGTGTAGTTTCCCTAAAGCTCAGGTGTTTGTGGATTGCTCGGTGGGTTCGAATCACTGTCCTTTGATTGTTGATTTGGAGTTCTCTGATTCTAAGTCTGACCGCAGCTTTAAATTTGAGATGGTTTGGCTTGATCATCCGGATTATAAGGAGGTTATGAGGAAAGGCTGGTTTAGTTCTAATGGTTTGTGGGAGGATGCAGTTTTGGAGCTTATTAGGAGGTTAGAGGATTGTAAGGAAGGTTTGGTGAAATGGAGTAGAGAGGCCTTTCGTAATAATAAGGTTGTGATTGCTAAACTTTTTGAACAACTTCGCTCTTGTAGTGATGAGTTGCTCACTGAGGATTTGAAATTGAGAAATGAAGAGATTTTGAAAGGCTTGGAGGAGGCTTGGGATAGGGAAGAGAAGTATTGGTTCCAAAGATCAAGGGTGAATTGGCTTTCCTTTGGCGATAGGAATTCCAAGTATTTCCATGCTTCGGTAATGCAAAGGAGAAGGAGAAATAAGATTCTCAGGTTGAAGAATAGGGATGGGAATTGGCTTGGCAGTGAGGGTGAGGTGGCTGCTTGTTTTACTGAGTTTTACTCTGACCTGTTTAAGAAAGGTGGCTCGAGGGATTTTTCTAAAGTTTTGGATTATGTGAAGCCAGTTATTACCGAGGCTGATAATGAAGTTCTGCTTAAGGAGGTGTCTATGATGGAGGTTAAGGAGGCTGTTTTTCAGCTTGGGGGGCTTAAGGCACCTGTTCCTGATGGGTATTCTGGTATTTTTTACCAAGATGCTTGGGATGATGTTGATGTGATTAAAGAGGAGGTGTGTGATATTTTGGGGATTAAGGATAGTGTGGATCCGGGCTTTTATCTAGGGTTACCTATGGTTTTGGGCAGGTCAAAGGTTGAGGCATTGGCTTTTGTGCGGGAGAAGGTTACGAGGAAAGTGAGTAGTTGGAGGAATAACTTCTTATCTCATGCGGGGAGGGAAGTGCTTGTGAAGGCAGTGGTTAACGCTATTCCTGCGTACTCTATGTCTGTTTTTAAGTTTCTTAAAAAATCGTATAAGGAGCTTGATAGTCTTATTTCGAATTTTTGGTGGGGTCTTAAGGAGGATGGGAGCAAGGTTCATTGGAAGGCTTGGCATAAGCTTGTGAAGCCCAAGGTGGAGGGTGGTCTTGGGTTTAAAGATTTTGAGAGTTTCAACCTGTCACTGTTGGCAAAACAAGCTTGGAGAATGGTTGAGTCTCCGAATGAGCTCTGGGTACAGGTTTTGAAGGGTTTGTATTTCCCTTCTGAGGATTTCTTGTCGGCTAAGAAGGGCCACAAGGCTTCGTGGGTGTGGTCTAGTATTTTAGAAGGGAGGAAGCTTCTCTTAGAAGGATCTTGTTGGAAAGTTAGGGATGGTTGCTCTGTATCAGTTTGGGGAGATAGATGGATTCCTGGTCTTGAGGGGTTCAggctgagttctattcttccTGAGGATGGGATTGATTTGAGGGTGGTTGATCTTATCCAAGATGGTTCTTGGAATTTGTCTAGTATTCAGGAGCATTTGGAGCCTATCGAGGTTAAAGCTATTAAGGCTGTCTCTATTCCTAGTGGGGGAGGTGCTGACAGGTTGGTATGGCCTTTCTCCAAAAGTGGTAAGTTTGAAGTTAAGGGTGGTTACAGGTTTGCTTGCAAGAGTTTTGGTGCTGTTGATTGCAGTGATCCTTCTTGCTCTttttcttctcctccttctctttgGAAGGCTGTGTGGGGCCTTGGGGTGGGGCCTAAGGTTAGGATGTTCTTGTGGAGGGCTTGGAAGCCTTACCTACTAGGGAAGCATTATTTAGGAGGAAATGTGCGGTGTCTTCTTACTGCCCGATTTGTGGGTTGGAGGAGGAGACGGTGGAGCATGCTCTGTTATTATAATAAGGAGATTGATGAGAAGGGCCTTTTGCTGGTGGCTTCCATTTGCTGGGAAGTGTGGAAGGCGAggtgtgattttatttttcaaggtGTGCAAGTTGATCCTATGAAGTGTTGTCTTAAGGCTTGCTCTGCTGTGATGGAGATTTGTGGGTTGGGTAAGGCTCATCCTCGGCCTGTTTTGAAGCCTGCCGTTGTTGACTTTGTGCCGAACTGCTGGATCCCTCCTTGTAAGGATTCAGTTAAGGTTAATTTTGATGGAGCTTTTAAAAAGGATTCATTGGATGCTGGGGTTGGTTTCTTGGTTAGAGATATGGATGGTGATATGTGGATGGGATACAGTGGTAAGGTGTTTGCTTCTTCTAGTCTGGTTTGTGAAGCTTTGGCCCTGAAAATGGCAATTTCAATGGTTGATTGCTTGCCGGATTTGAAGTTTATTTTTGAGATGGATTGTGAAGTCTTGTTCAATTTGAATTTGTCCTTTTCTTTGGTGCGGCGTAATGGGAATCAAGCGGCTGATTGGCTCGCGAAGAGTGCCTTAAAGGGGTTGGCTCCGTCAGGTTGGGTTATTAACCCTCCACCCCCTCTGGCTCGGTTACTGGCTCTTGACAGGGAGTTTGCTAAATTTGCAATTGAGGATGCCACCGGAGATTCATTCACACACAacaaaatcatcatcatcatcacaaaCCTGAATCCCGAGATGGGGAATTGTTGCAGTCAAGATTATAGGTCTCGAGCCCTAATGAAAAGTGAGATGAAGGAAGATGGAGAAATGGAGGGTGGAAATGACAATCATGTCCATACCGCACACGTTGAAGGTGAAGGCCGAATCAAGTGGAGAGGATCCTCCAAGTTTGTGTCAATGTACACACAGAAGGGTAAAAAAGGAATCAATCAAGATGCTATGACAGTGTGGGAGGACTCAAGTGTAGAAAAAGGCATGACATTTTGCGGTGTGTTCGATGGTCATGGTCCTCTTGGCCATTTAATTTCCCGTTACCTACGTAACCATTTGCCCATAAAGCTTTCTGAAGAAATCAAAACCTCACATCCTCAAAATAACCCAAACATCTCCTTCTCTtcatgggagaaatgcttcatcAAGTCCTTCCATGACATGGACCAAGCCATTGCTCGCGACATCAACACCGACAGCTTTTACAGCGGTAGTACGGCCGTAACTTTAATCAAACAGGATGACCAGCTGATACTTGGCAATTTGGGGGATTCTCGTGCGATTCTTTGTATGAGAGGAACAAATGACCAGTTTTTGCCTGTTCAACTCACTGTTGACTTGAAACCAGATCTTCCAAGTGAAACTGCAAGAATCCATAGCTGTGAAGGCAGAGTTTATGCAGAAGAAGAAGAGCCTGATGTGTGCAGAATATGGATGCCTGATGAAGATTGCCCTGGACTTGCTATGTCAAGAGCCTTTGGAGATTTTTGCCTTAAAGACTATGGCCTCATCTCAACACCTGATGTCTTCTATAGAAAAATAACCGACCAGGATGAATTTGTGGTTTTGGCATCTGATGGTATTTGGGATGTGCTAACAAACAATGAAGTAATAGACATAGTGGTTTCAGCACCAAGGAAATTTGCTGCAAAATTGCTAGTGAAGTGTGCAGTCCGGGCATGGGAGCATAAGTTTCCTGGATCCAATGCTGATGATTGTGCAGCCATATGCTTGTTTCTGAAGGACCGGCCGGACGAAGAAGCCACTCTTGAGTCTGGGGAAAATAAACACCAGAAGAAGCATCTTCACGGCCAGAAATCCGGTGGATTCGACGACACCGAGAGCATCGGCGCCGTGGAATCGGTGGGCGAATGGGAAGGTCTTCAAGGGCTATCCAGAGCCAATTCCATCACAAAAATTCCAAGAATCTCTATGGATGCTTTTAGGAGGCAATCATCATCTAGGCGTGTTGAGGGGGTTGCAGTTTACTAG 4353 0.4365 LGAALTVKALTELCGKYKPQVVFLMESRSKKDKMERLRRRFRFQFGQAFYVDPVGKSGGLAVWWHDDLVFNVLFHSKNFIHARLGSVEGDVPCYLTCVYGPPLEGDRHVAWDRMRTISNGVSGAWLYCGLFDLEYKGPFFTWANNRLGDAHVKEKLDRVLGNLDLLCSFPKAQVFVDCSVGSNHCPLIVDLEFSDSKSDRSFKFEMVWLDHPDYKEVMRKGWFSSNGLWEDAVLELIRRLEDCKEGLVKWSREAFRNNKVVIAKLFEQLRSCSDELLTEDLKLRNEEILKGLEEAWDREEKYWFQRSRVNWLSFGDRNSKYFHASVMQRRRRNKILRLKNRDGNWLGSEGEVAACFTEFYSDLFKKGGSRDFSKVLDYVKPVITEADNEVLLKEVSMMEVKEAVFQLGGLKAPVPDGYSGIFYQDAWDDVDVIKEEVCDILGIKDSVDPGFYLGLPMVLGRSKVEALAFVREKVTRKVSSWRNNFLSHAGREVLVKAVVNAIPAYSMSVFKFLKKSYKELDSLISNFWWGLKEDGSKVHWKAWHKLVKPKVEGGLGFKDFESFNLSLLAKQAWRMVESPNELWVQVLKGLYFPSEDFLSAKKGHKASWVWSSILEGRKLLLEGSCWKVRDGCSVSVWGDRWIPGLEGFRLSSILPEDGIDLRVVDLIQDGSWNLSSIQEHLEPIEVKAIKAVSIPSGGGADRLVWPFSKSGKFEVKGGYRFACKSFGAVDCSDPSCSFSSPPSLWKAVWGLGVGPKVRMFLWRAWKPYLLGKHYLGGNVRCLLTARFVGWRRRRWSMLCYYNKEIDEKGLLLVASICWEVWKARCDFIFQGVQVDPMKCCLKACSAVMEICGLGKAHPRPVLKPAVVDFVPNCWIPPCKDSVKVNFDGAFKKDSLDAGVGFLVRDMDGDMWMGYSGKVFASSSLVCEALALKMAISMVDCLPDLKFIFEMDCEVLFNLNLSFSLVRRNGNQAADWLAKSALKGLAPSGWVINPPPPLARLLALDREFAKFAIEDATGDSFTHNKIIIIITNLNPEMGNCCSQDYRSRALMKSEMKEDGEMEGGNDNHVHTAHVEGEGRIKWRGSSKFVSMYTQKGKKGINQDAMTVWEDSSVEKGMTFCGVFDGHGPLGHLISRYLRNHLPIKLSEEIKTSHPQNNPNISFSSWEKCFIKSFHDMDQAIARDINTDSFYSGSTAVTLIKQDDQLILGNLGDSRAILCMRGTNDQFLPVQLTVDLKPDLPSETARIHSCEGRVYAEEEEPDVCRIWMPDEDCPGLAMSRAFGDFCLKDYGLISTPDVFYRKITDQDEFVVLASDGIWDVLTNNEVIDIVVSAPRKFAAKLLVKCAVRAWEHKFPGSNADDCAAICLFLKDRPDEEATLESGENKHQKKHLHGQKSGGFDDTESIGAVESVGEWEGLQGLSRANSITKIPRISMDAFRRQSSSRRVEGVAVY 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0447 1450 SUPERFAMILY PP2C-like 1084 1370 IPR036457 -
Sto6g0447 1450 Pfam Reverse transcriptase-like 885 958 IPR002156 GO:0003676|GO:0004523
Sto6g0447 1450 SUPERFAMILY DNase I-like 4 192 IPR036691 -
Sto6g0447 1450 PANTHER ALPHABET, ISOFORM E-RELATED 1036 1425 - -
Sto6g0447 1450 CDD PP2Cc 1087 1367 IPR001932 -
Sto6g0447 1450 SMART PP2C_4 1075 1365 IPR001932 -
Sto6g0447 1450 MobiDBLite consensus disorder prediction 1375 1400 - -
Sto6g0447 1450 MobiDBLite consensus disorder prediction 1375 1395 - -
Sto6g0447 1450 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1036 1425 - -
Sto6g0447 1450 Gene3D - 880 958 IPR036397 GO:0003676
Sto6g0447 1450 CDD RNase_H_like 884 978 IPR044730 -
Sto6g0447 1450 SUPERFAMILY Ribonuclease H-like 882 986 IPR012337 -
Sto6g0447 1450 Gene3D Endonuclease/exonuclease/phosphatase 1 191 IPR036691 -
Sto6g0447 1450 Gene3D - 1078 1370 IPR036457 -
Sto6g0447 1450 Pfam Protein phosphatase 2C 1113 1333 IPR001932 -
Sto6g0447 1450 ProSiteProfiles PPM-type phosphatase domain profile. 1087 1367 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0447 Sto-Chr6 4919064 4929952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0447 1036 1371 PP2C-type Phosphatase Gene Family AT5G01700 51.009 2.24e-105 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0447 - - gmx:100783603 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0447 6 4919064 4929952 Sto1g2163 1 29852438 29856226 CCT
Sto6g0447 6 4919064 4929952 Sto6g0447 6 4919064 4929952 ECH