Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0404 ATGGCGATTCCTCCCCAAACATTCCCTCCCCGAAAACGACGCCCATCGGCGGGGTCGTTTATCTCCCCTAGACTCACCGAACTCGACCTCCTCCACTCTCTCCTCCACCTCACCCACGAAATCTCCTCTCTCGAACCCATCCAATTCCTCCTCAAAcgcaattccaattccattatTCGCAAATCCAATCTCCTCGCCCTCCTCTTCGAAGACCTAATTCGAACCTCCGGTTGCTGCCTCTCGTCGCAATCCGTCGTCCTCTGTTTCGAAGAGATGTACATTGTTTTACAGAGAGTCAAGACGCTGATTGAGGATTGCGCTAATGGAAGCAAGATGTGGCTGTTGATGCAGACCGAATCAATCGCCGATTCTTTCCACAAACTCACAGCCGATTTGTCCACGCTCTTGGATATCTTCCCTGCCAGTGAGATGCAATTGAGCGACGACGTTCGGGAGCTTTTGAATCTCATCATGAAACAATGTTCGGAATCCAAGGCTTTTGTGGATCCGAAAGATAAGGATCTCAGGCGCGAGGTTCTCACCATACTAGATCGGATCAAGCGAGAGATCGTCCCTGATCAGTCCAAGCTCGCGGATATTTTCGAGAGGTTGGAGATCAGAGACTCGTCTAGCTGTAGGGCGGAGATTGAGAGTCTAGAGGAGGAGATTCAGAATCGGAGCGACGACCAATCGCAATCGGAGATAGTCGCGTTGATCGGGCTGGTGCGATACGCGAAATGCGTCCTGTTCGGTGCTTCCACGCCATCGCCGTCGCCGTCGTCGTCGTCTTCGTCGGACTCGTTGCGGCGGATACAGCCGTCGGAGATCGTTATTCCGGCGGATTTTAGGTGTCCGATTAGTCTCGAACTAATGCGGGACCCAGTTGTGGTGGCTACAGGTCAGACGTACGATCGGGAGTCCATCAAATTGTGGTTCGAATCAGGACACAACACGTGTCCGAAGACCGGTCAAACTATGGCCCACACAGAGCTTATCCCTAACCGTGCCTTGAAGAACCTGATGGCCATGTGGTGCCGCGAGCAGAAGATCCTATTTGAAACCGCGGGAAGTAACGAGAAAGTTAATGGCGTTATAGTCAACAAAGCCGCTTTGGAAGCTACGAGAATGACGGCGTTATTCTTAGTCAACAAGCTTTCTCTCTCACTTTCCATGGAAGCTGCTAACGCCGTCGTTTATGAGCTCCGTGTTTTAGCCAAAACGGACTCTGACAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCTCTCCTAGTTCGCTACCTcagcttccacgtcggctcgcAAAGCCCAAACCTACAAGTTAACGCCGTCACCACGATCCTCAACCTCTCCATCCTCGAGGCGAACAAAACGAGGATAATGGAAACTGACGGGGCATTAAACGGCGTCATCGAGGTCCTCCGCTCGGGAGCCACGTGGGAAGCGAAGGCCAACGCAGCCGCCACAATATTCAGCTTATCAGGTGTTCACTCGTACAGGAAAAGACTAGGGAGGAAGACACGTGTCACCCGGGGGTTGATTGACCTGGCAAGGTGTGGGCCCACAAGTGCAAGGAGGGACGCTCTGGTGGCAATTTTGACCATTGCGGCGGATAGAGAGACGGTGGCGAGGTTGGTGGAAGGTGGGGTGGTGGAGATGACGGCGGAAGTGATGGACGGGTTGCCGGAGGAGGCGGTGACGATTCTCGAGGTGGTGGTGAAGCGGGGAGGGCTGGTGGCCGTCGCCGCCGCTTACGGCAGCATTAAGAAATTGGGAGTGATATTAAGGGAAGGTTCCGATAGGTCCAGAGAGAGCGCGGCGGCGACACTTGCGACAATGTGCCGGAAAGGAGGGTCGGAGATAGTGGCGGAGCTGGCGGCGATACCGGGAGTTGAAAGGGTGATATGGGAATTAATGGCGGTTGGGACTGTAAGAGGGAGGAGAAAAGCAGCCACGTTGTTGAGAATTCTACGGCGGTGGGCGGCGGGTTTGAACGGTGGTGGGTTAACGGAAGGATTTTCAACTACTATCACTTCGTCAACAACTGTGGTTTCAACACAATAA 2064 0.5276 MAIPPQTFPPRKRRPSAGSFISPRLTELDLLHSLLHLTHEISSLEPIQFLLKRNSNSIIRKSNLLALLFEDLIRTSGCCLSSQSVVLCFEEMYIVLQRVKTLIEDCANGSKMWLLMQTESIADSFHKLTADLSTLLDIFPASEMQLSDDVRELLNLIMKQCSESKAFVDPKDKDLRREVLTILDRIKREIVPDQSKLADIFERLEIRDSSSCRAEIESLEEEIQNRSDDQSQSEIVALIGLVRYAKCVLFGASTPSPSPSSSSSSDSLRRIQPSEIVIPADFRCPISLELMRDPVVVATGQTYDRESIKLWFESGHNTCPKTGQTMAHTELIPNRALKNLMAMWCREQKILFETAGSNEKVNGVIVNKAALEATRMTALFLVNKLSLSLSMEAANAVVYELRVLAKTDSDSRACIAEAGAIPLLVRYLSFHVGSQSPNLQVNAVTTILNLSILEANKTRIMETDGALNGVIEVLRSGATWEAKANAAATIFSLSGVHSYRKRLGRKTRVTRGLIDLARCGPTSARRDALVAILTIAADRETVARLVEGGVVEMTAEVMDGLPEEAVTILEVVVKRGGLVAVAAAYGSIKKLGVILREGSDRSRESAAATLATMCRKGGSEIVAELAAIPGVERVIWELMAVGTVRGRRKAATLLRILRRWAAGLNGGGLTEGFSTTITSSTTVVSTQ 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0404 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 672 - -
Sto6g0404 687 CDD RING-Ubox_PUB 282 324 IPR045210 -
Sto6g0404 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 465 IPR000225 GO:0005515
Sto6g0404 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Sto6g0404 687 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Sto6g0404 687 Coils Coil 687 687 - -
Sto6g0404 687 Gene3D - 522 661 IPR011989 -
Sto6g0404 687 SUPERFAMILY ARM repeat 381 657 IPR016024 -
Sto6g0404 687 PANTHER U BOX DOMAIN-CONTAINING 11 672 - -
Sto6g0404 687 SMART arm_5 408 452 IPR000225 GO:0005515
Sto6g0404 687 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Sto6g0404 687 Gene3D - 380 510 IPR011989 -
Sto6g0404 687 SUPERFAMILY RING/U-box 275 350 - -
Sto6g0404 687 Pfam Armadillo/beta-catenin-like repeat 409 451 IPR000225 GO:0005515
Sto6g0404 687 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0404 Sto-Chr6 4471613 4473676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0404 9 685 U-box Gene Family AT5G01830 58.590 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0404 - - tcc:18602242 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0404 6 4471613 4473676 Sto6g0404 6 4471613 4473676 ECH