Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0395 ATGTACTACCCTCATCCCAATTCATTCAAGCTTGAATCAAAAGAAGCAATGGACATTGCCTGGTTTTTCCTGTTCCTACTCATTATTTCCACTGCTAATGCCACATTGGCTAAGGCTAACCAATACTCTGGCGGTAATGGAGATGGCTGGCAAACTGCCCACGCCACTTTCTACGGTGGCAATGATGCTTCTGGCACTATGGCATGTGGGTATGGGAACTTACTAAGCCAAGGCTATGGAACAAACACTGCAGCATTAAGCACAGCACTTTTCAACAATGGCCTCACCTGTGGAGCTTGTTACCAGCTGCGTTGTAATGACGACCCACAATGGTGCCTCCCTGCTGCTTCCATCATCACTATCACTGCCACCAACTTCTGTCCTCCAAACTTAGCTCTCCCTAACAACAATGGCGGATGGTGCAATCCCCCTCTTCAGCATTTCGATTTAGCAGTCCCTGCATTCACTCAGATTGCTCAATACAAAGCTGGAATCATCCCTGTGCTCTTCAGAagGGTGGCATGTGTGAAGAAAGGAGGGATGAGGTTCAGCATGAGTGGCCATTCCTACTTCAATTTGGTACTCATAACAAATGTGGGAGGTGCAGGAGACGTTGAAGCAGTCTCAGTCAAAGGCTCATCATCAAAGGGGTCAGGGTGGGAAGCCATGTCCAGAAACTGGGGTCAGAATTGGCAGTCCAATTCATACCTTAATGGTCAGCCTCTATCCTTCAGGGTCACTACCAGTGATGGCCAAACCATTACCAGTTACGACGTCGTTCCTGCAGGTTGGAAGTTTGGCCAAACCTTTGAAGGTGCTCAGTTTTAA 828 0.4783 MYYPHPNSFKLESKEAMDIAWFFLFLLIISTANATLAKANQYSGGNGDGWQTAHATFYGGNDASGTMACGYGNLLSQGYGTNTAALSTALFNNGLTCGACYQLRCNDDPQWCLPAASIITITATNFCPPNLALPNNNGGWCNPPLQHFDLAVPAFTQIAQYKAGIIPVLFRRVACVKKGGMRFSMSGHSYFNLVLITNVGGAGDVEAVSVKGSSSKGSGWEAMSRNWGQNWQSNSYLNGQPLSFRVTTSDGQTITSYDVVPAGWKFGQTFEGAQF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0395 275 SUPERFAMILY PHL pollen allergen 177 272 IPR036749 -
Sto6g0395 275 Pfam Lytic transglycolase 83 169 IPR009009 -
Sto6g0395 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 180 IPR007112 -
Sto6g0395 275 PANTHER EXPANSIN 19 275 - -
Sto6g0395 275 Gene3D - 33 175 IPR036908 -
Sto6g0395 275 Gene3D - 180 275 IPR036749 -
Sto6g0395 275 SMART dpbb_1 83 170 IPR007112 -
Sto6g0395 275 SUPERFAMILY Barwin-like endoglucanases 49 198 IPR036908 -
Sto6g0395 275 PANTHER EXPANSIN-A15 19 275 IPR002963 GO:0009664
Sto6g0395 275 Pfam Expansin C-terminal domain 181 261 IPR007117 -
Sto6g0395 275 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 105 116 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 119 129 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 138 155 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 155 168 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 179 191 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 229 250 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin signature 258 274 IPR002963 GO:0009664
Sto6g0395 275 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Sto6g0395 275 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Sto6g0395 275 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Sto6g0395 275 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Sto6g0395 275 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Sto6g0395 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 272 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0395 Sto-Chr6 4390360 4391749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0395 23 275 Expansin Gene Family AT2G40610 69.804 1.27e-129 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0395 - K20628 mnt:21393962 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0395 6 4390360 4391749 Sto6g0395 6 4390360 4391749 ECH