LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g0390	ATGCCTCGCCGTCTTCTGGACGCCGAGCTAAGCATGCCTCCGGCGTATGGGAACAGGACGAACGAATCGTTCATCAGCGACGCGAACTTCGATGCGAACATGGTGATCATATTGGCGGCTCTATTGTGCGCATTGATATGCGCGCTAGGGTTGAACTCCATAGTGCGGTGCGCGATGCGTTGTAGCCGAAGATTTTCCGCAGAGACCACAGATCAAACAGCTTCAAGGCTTGCCTCGACGGGGCTGAAGAAGCGTCACCTGAGTCAGATTCCGGTGAAGGAGTACGGTTCCGGCGTGAATATTCCGGCGACGGAGTGCCCGATTTGCCTCGGGGAGTTCGAGAAAGGAGACAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTGAGGTGCATAGACACATGGCTTCTGTCACATTCTTCTTGCCCTAATTGTCGCCATTCGCTGCTTGACAAATCcacaaattcaaatACGCCGGAAGAGGGGTCCGGCCGGCAAGGCAACGTTATAGCGGTGGTGGAGCAGGCAAGTTGA	540	0.5389	MPRRLLDAELSMPPAYGNRTNESFISDANFDANMVIILAALLCALICALGLNSIVRCAMRCSRRFSAETTDQTASRLASTGLKKRHLSQIPVKEYGSGVNIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLDKSTNSNTPEEGSGRQGNVIAVVEQAS	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g0390	179	Pfam	Ring finger domain	105	148	IPR001841	-
	Sto6g0390	179	PANTHER	RING-H2 FINGER PROTEIN ATL74	2	167	-	-
	Sto6g0390	179	CDD	RING-H2_EL5_like	105	148	-	-
	Sto6g0390	179	SMART	ring_2	106	147	IPR001841	-
	Sto6g0390	179	ProSiteProfiles	Zinc finger RING-type profile.	106	148	IPR001841	-
	Sto6g0390	179	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	66	153	IPR013083	-
	Sto6g0390	179	SUPERFAMILY	RING/U-box	89	154	-	-
	Sto6g0390	179	PANTHER	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	2	167	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g0390	Sto-Chr6	4332254	4332838	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto6g0390	1	152	C3H Transcription Factor Family	AT3G10910	60.870	3.79e-60	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g0390	K19040		-	gmx:100814602	267.314

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto6g0390	6	4332254	4332838	Sto6g0390	6	4332254	4332838	ECH