Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0381 ATGAAGGAGGAGCTGAGTTTTCTGTTAAGTGTAGGGATTTTGGTTCTGCTTTGGGGGAATTGTATGGGTAGGTTTGTGGTGGAGAAGAACAGTATAAAAATCACTACGCCCAATTCGTTAAAAGGTACATATCAGTGTGCGATTGGGAATTTTGGGGTTCCCAAGTATGGAGGAACTATGGTTGGCTCCGTCGTGTACCCCAATGAAAATCAGAAAGGATGCAGGAAATTTGATGATGCTGCTTTCAGGTCCAGGGCCGGAGGTTTTCCCAGCTTTCTTCTCATTGATCGTGGAGATTGCTTCTTCACTTTAAAGGCGTGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTGGTTGTGGATAATAGGATGGAGCCACTAATAACCATGGACACCCCTGAAGAAGGAGGGAATGCAAATGACGATTATGTGGAAAAGATTAGCATTCCTTCTGCCCTCATCACTAAAACCCTAGGGGATAAGATGAAAAAGGCCCTCTTGAATGGAGACATGGTTAAGGTAAACCTTGATTGGAGGGAGGCTCTTCCACATCCTGATGATAGAGTTGAGTATGAATTCTGGACAAATAGCAACGATGAGTGTGGGCCAAAGTGTGACAGTCAAATCGATTTTGTGATAAACTTCAAAGGGGCAGCTCAGCTACTTGAGAGGAAAGGGTTCACACAGTTCACCCCTCACTATATAACTTGGTATTGCCCTGAAGCTTTTATAAATAGCAAGCAATGCAAGTCTGAGTGCATCAACCATGGAAGGTACTGTGCTCCAGATCCTGAGCTAGATTTCAGTAGAGGCTATGATGGCAAAGATGTTGTCATTCAGAACTTGCGTCAAGCTTGCTTCTTTAGAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTACGTCACTGACTTCTCAATCCGTTGCCCCATGAAAGAAAACAAGTACTCTGAAGAATGCTCAGATGAAGTTATTAAATCTCTAGGTGCTGAcctgaaaaaaattaaagattgtGTTGGAAATCCTCAAGCAGATGCTGAAAATCCTGTTCTCAAAGCCGAACAGGATGCACAGATTGGCAAAGGTTCTCGTGGTGATGTTACTATACTGCCTACACTAGTTATAAACAATAGACAGTATAGAGGTAAGTTGGAAAAAGCAGCAGTTCTTAAGGCAATTTGTTCTGGCTTCCAAGAGACCACAGAGCCATCAATTTGTTTGACTCCAGATATGGAAACAAATGAGTGTTTGGACAACAATGGTGGCTGCTGGCATGACAAATCCGCTAACATTACTGCATGCAGGGATACTTTCAGAGGAAGAGTTTGTGAATGCCCTATTGTTCAAAATGTGAAGTTTGTTGGTGATGGATATACCCACTGTGAAGCTTCAGGAGCCTTGCGGTGTGAAATCAAcaatggaggttgctggaaggGAACCCAAAGTGGCAGGACATACTCAGCTTGTATTGATGACCGTACAAAAGGTTGCAAGTGTCCACCTGGGTTCAGGGGTGATGGAGTCAAGTCCTGTGAAGATATAGATGAGTGCGAAGAGAAGTTGGCATGCCAGTGCCCAGAGTGCAAATGCAAGAATACTTGGGGAAGTTATGACTGCAGCTGTAGTGGTGGTTTGTTCTACATACGAGAAAATGACATGTGTATTGGTAAATATAGTACTTCAGGGGGCAACGGAGGCTTCATTTGGATGTTCATTTTCATCTTGCTTGCTGCTGCTGCTGGGGGATATGCATTTTACAAGTACAGAATTCAGAGATATATGGACTCTGAAATACGGGCAATCATGGCCCAATATATGCCGTTGGATAATCAACCTGAGGCCCCTAATCACCCTCATAATGAACTCTag 1875 0.4288 MKEELSFLLSVGILVLLWGNCMGRFVVEKNSIKITTPNSLKGTYQCAIGNFGVPKYGGTMVGSVVYPNENQKGCRKFDDAAFRSRAGGFPSFLLIDRGDCFFTLKAWNAQNGGAAAILVVDNRMEPLITMDTPEEGGNANDDYVEKISIPSALITKTLGDKMKKALLNGDMVKVNLDWREALPHPDDRVEYEFWTNSNDECGPKCDSQIDFVINFKGAAQLLERKGFTQFTPHYITWYCPEAFINSKQCKSECINHGRYCAPDPELDFSRGYDGKDVVIQNLRQACFFRVANESGKPWQWWDYVTDFSIRCPMKENKYSEECSDEVIKSLGADLKKIKDCVGNPQADAENPVLKAEQDAQIGKGSRGDVTILPTLVINNRQYRGKLEKAAVLKAICSGFQETTEPSICLTPDMETNECLDNNGGCWHDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGALRCEINNGGCWKGTQSGRTYSACIDDRTKGCKCPPGFRGDGVKSCEDIDECEEKLACQCPECKCKNTWGSYDCSCSGGLFYIRENDMCIGKYSTSGGNGGFIWMFIFILLAAAAGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEAPNHPHNEL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0381 624 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 603 - -
Sto6g0381 624 SMART egfca_6 515 557 IPR001881 GO:0005509
Sto6g0381 624 Gene3D Laminin 469 552 - -
Sto6g0381 624 Gene3D - 22 185 - -
Sto6g0381 624 SUPERFAMILY PA domain 91 127 IPR046450 -
Sto6g0381 624 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Sto6g0381 624 Gene3D Laminin 409 454 - -
Sto6g0381 624 Gene3D Glutaredoxin 267 398 - -
Sto6g0381 624 CDD EGF_CA 515 546 - -
Sto6g0381 624 Pfam PA domain 62 161 IPR003137 -
Sto6g0381 624 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 10 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0381 Sto-Chr6 4255408 4258997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0381 1 624 Miscellaneous Gene Families AT2G30290 68.850 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0381 - - gmx:100815266 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0381 6 4255408 4258997 Sto1g2135 1 29562637 29606508 CCT
Sto6g0381 6 4255408 4258997 Sto6g0381 6 4255408 4258997 ECH