Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0374 ATGACACTCATGGCTTCTCTGCTTCGTCCAACTACACCCACCCTTCACCATAATCGAATGACAATCTCCTTCCCTCCTCTGAAACCCACTTCTCCAAATAACCTCCCTTTCTTCACAACCCGTTTCAAAAGCAATTCCGCAAAGTGCAAAGCCTTTTTAGATAACATTCCCAAAGATTTGTTGGAGAACACTATATATCTGAATCAATTCCCCGTTCTCCGATCAGGACTAGTCCAATTCCAGAGATGGGGTTTCCTAGTTTTTGCAGGACTGACGTGGGTTTATTTGACTGCAAGGCCAGGTGTTCTTATAGGTGCCATTGATGCCTACCTTCTGGCTCCACTTCAACTAGGTTTGGACAATTTAACAGGAAGAAGGAATCTCAAGAGAACTGATTTTAGGATTGGCGATAAGCTTGGAGAAGGGTCATTCGGTGTTGTTTATTCGGGTGTTGTGGTTCCCAAGAATGGGAATATAGAAGAGGAGGAGCAGAAGAGGGGAAGGAGCAAGGCAACAAATTTGAATGTGAAATCTAAGGATAAAGTTATTCTTAAAAAGGTGAAGGTTGGTATCCAAAAGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGGCTTTCCAGAGCAGCTCCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTCATAAAAGGCGGAAAATGGCTCGTTTGGAAGTTTGAGGGAGATCGCTCTCTTGCTGATTACATGAAAGATCGTAACTTTCCTTCGAACTTAGAGTCTATCATGTTTGGAAGTGTCTTGCAAGGTGTAGACTCTTCTAAACGGAATGCATTGATTATCAAGCAAATAATGCGCCAGATCATTACGTCTCTTAGGAAAATTCACGACACTGGCATTGTTCACAGAGATGTAAAGCCAGCCAACTTAGTAGTCACTAAACGAGGGCAGATTAAACTCATAGATTTTGGTGCAGCAACAGACCTTCGGATTGGAAAGAATTATGTGCCAAACAGTACCTTACTGGATCCAGACTACTGCCCCCCAGAATTATATGTACTCCCAGAAGAAACACCAAATCCTCCTCCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTGAACAGTCCTGATCTTTTTGATATGTATTCTGCTGGAATTGTACTCCTGCAAATGGCAATACCAACCTTACGGTCTCCAGCTGCTTTAAAGAACTTCAATTTGGAAGTGAAAACGTGTAGATATGACTTGAACAAATGGAGAGAATACACCCGCCTCAGACCCGACTTCCAAATTCTTGACAGTGACTCGGGTAGAGGATGGGACTTAGCGACAAAGCTTGTCTGTGAGAGAGGTTCCCTAAGAAGAGGACGTTTATCTGCTGCTGATGCTTTGAGGCATCCTTATTTTCTTCTGGGTGGTGATCAAGCAGCTGCAGTCCTTTCAAAATTGAGCTTAAGCAGAAAGTGA 1488 0.4281 MTLMASLLRPTTPTLHHNRMTISFPPLKPTSPNNLPFFTTRFKSNSAKCKAFLDNIPKDLLENTIYLNQFPVLRSGLVQFQRWGFLVFAGLTWVYLTARPGVLIGAIDAYLLAPLQLGLDNLTGRRNLKRTDFRIGDKLGEGSFGVVYSGVVVPKNGNIEEEEQKRGRSKATNLNVKSKDKVILKKVKVGIQKAEEFGDFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFIKGGKWLVWKFEGDRSLADYMKDRNFPSNLESIMFGSVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNSTLLDPDYCPPELYVLPEETPNPPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEVKTCRYDLNKWREYTRLRPDFQILDSDSGRGWDLATKLVCERGSLRRGRLSAADALRHPYFLLGGDQAAAVLSKLSLSRK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0374 495 SMART serkin_6 133 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g0374 495 Gene3D Transferase(Phosphotransferase) domain 1 274 478 - -
Sto6g0374 495 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 3 493 IPR044803 GO:0004674|GO:0009579
Sto6g0374 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Sto6g0374 495 SUPERFAMILY Protein kinase-like (PK-like) 130 477 IPR011009 -
Sto6g0374 495 Gene3D Phosphorylase Kinase; domain 1 120 243 - -
Sto6g0374 495 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 3 493 - -
Sto6g0374 495 Pfam Protein kinase domain 283 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g0374 495 ProSiteProfiles Protein kinase domain profile. 133 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0374 Sto-Chr6 4196232 4198653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0374 133 332 MAP Kinase Kinase Kinase AT3G13530 24.631 1.99e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sto6g0374 Pkinase 2.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0374 - - gmx:100795624 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0374 6 4196232 4198653 Sto6g0374 6 4196232 4198653 ECH