Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0292 ATGGAGAAGCACGAGTGCAAGCTCTGCTTCAAAAGCTTCTCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGAAGAAGCTTCCACTTCCTGCGAAACCAGAGGCATCGTCGCCTCCTCACACCTTACTCAGTTTCGAGGCCGAATCggcgtcttcttcttcttcttcctcatcgtccgacgacgacgacggagatgatgatgatgaagaaaaagGTTTGAGCTATGGACTAAGAGAGAATCCGAAGAAGAGCATTCGCCTCGCAGATCCTGAGTTTTCGTTCTTGGTGGATGCTACTAATAACAATGGTTCTGTGATTCTTCAAGACAGAGAAAGCGAGACCGAGTCGTCGAAGGATCCGACTCGGAGTCGTCGACGATCCAAGCGCGCTTGGAAACTCGGCGGTTTCCACGATCAATACAATCATCACCATCAATATCATCATCATAGGAAGCTAATTTTAGAAGAAGCAGAGATGAAGAGAAAGCTAAAATCGAAGAACAAAATTAGCAAGACCGAGTCAGAACCGGCGAGTTCAATCTCCGATGCGACGACGGAAGAAGATGTCGCATTCTGCCTCATGATGCTTTCCAGAGACAAATGGAAGAGACAGAAGGATCTGGAACGCCGATACGACGTCGTAGAAGACGAAgacgaggaagaggaagaagaagaagacgacgacgacgaagaagaagaagaggaagaggaagaagaagaagcggaGAGATCTCTAGACGATACCGACGAATCGGAGGAGAATTTGAAATCGTCGAAAACCAGAGCGCGTGGGAGATACACGTGCGAGACGTGCAAGAAGGTGTTTCGATCGTATCAAGCACTTGGAGGACACAGAGCGAGTCACAAGAAGATCAAAGTAGCGATGGCGATGGCGAATGAAGCGGAATTAACGGAGATGGATAACAATGGCGGAGGAGGAGCTTCTTCTTCAATGGCGGTGGTTCACGATAATAACTATAAGAAGGTTCACGAATGTCCTTTCTGTTTCAGAGTCTTCTCTTCAGGTCAAGCTCTTGGAGGACACAAGAGGACGCATCTCACTGGTTCTTCTTCAGCCACATCGATTCGAGCTTCCACCAAGTTCGTCGAAAATATGATAGATCTTAATCTTCCAGCTCCCATGGAAGAAGACGAGATTCTAATTGTAATTCAGTTCTTTTGGATTATAATGCTTTGA 1206 0.4129 MEKHECKLCFKSFSNGRALGGHMRSHMKKLPLPAKPEASSPPHTLLSFEAESASSSSSSSSSDDDDGDDDDEEKGLSYGLRENPKKSIRLADPEFSFLVDATNNNGSVILQDRESETESSKDPTRSRRRSKRAWKLGGFHDQYNHHHQYHHHRKLILEEAEMKRKLKSKNKISKTESEPASSISDATTEEDVAFCLMMLSRDKWKRQKDLERRYDVVEDEDEEEEEEEDDDDEEEEEEEEEEEAERSLDDTDESEENLKSSKTRARGRYTCETCKKVFRSYQALGGHRASHKKIKVAMAMANEAELTEMDNNGGGGASSSMAVVHDNNYKKVHECPFCFRVFSSGQALGGHKRTHLTGSSSATSIRASTKFVENMIDLNLPAPMEEDEILIVIQFFWIIML 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0292 401 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 392 IPR044303 GO:0006355
Sto6g0292 401 MobiDBLite consensus disorder prediction 216 251 - -
Sto6g0292 401 ProSitePatterns Zinc finger C2H2 type domain signature. 271 291 IPR013087 -
Sto6g0292 401 SMART c2h2final6 269 291 IPR013087 -
Sto6g0292 401 SMART c2h2final6 333 355 IPR013087 -
Sto6g0292 401 SMART c2h2final6 4 26 IPR013087 -
Sto6g0292 401 Coils Coil 207 257 - -
Sto6g0292 401 ProSitePatterns Zinc finger C2H2 type domain signature. 335 355 IPR013087 -
Sto6g0292 401 MobiDBLite consensus disorder prediction 108 132 - -
Sto6g0292 401 Pfam C2H2-type zinc finger 4 29 - -
Sto6g0292 401 Pfam C2H2-type zinc finger 268 293 - -
Sto6g0292 401 Pfam C2H2-type zinc finger 332 356 - -
Sto6g0292 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 296 IPR013087 -
Sto6g0292 401 MobiDBLite consensus disorder prediction 19 85 - -
Sto6g0292 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Sto6g0292 401 MobiDBLite consensus disorder prediction 167 186 - -
Sto6g0292 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 355 IPR013087 -
Sto6g0292 401 MobiDBLite consensus disorder prediction 45 61 - -
Sto6g0292 401 Gene3D Classic Zinc Finger 266 355 - -
Sto6g0292 401 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Sto6g0292 401 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Sto6g0292 401 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 392 - -
Sto6g0292 401 SUPERFAMILY beta-beta-alpha zinc fingers 268 355 IPR036236 -
Sto6g0292 401 MobiDBLite consensus disorder prediction 214 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0292 Sto-Chr6 3309062 3310458 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0292 1 394 C2H2 Transcription Factor Family AT3G60580 39.152 6.90e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto6g0292 zf-C2H2_6 2.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0292 - - zju:107424180 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0292 6 3309062 3310458 Sto6g0292 6 3309062 3310458 ECH
Sto6g0292 6 3309062 3310458 Sto1g1801 1 26209315 26210535 ECH