Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0289 ATGGCTTTGATTGTGGATCACCAATCAAACTTGAAGCATTTCTGTAAAATTTGCAAGAAAGGATTTGGGTGTGGGAGAGCTCTGGGAGGGCACATGAGGGCGCATGGCATCGGCGACGAAAGTGGCGCCATGGACGACGACGAAGACGACCCGGCAAGCGATTGGGAAGACAAGATTGGCGGCCCGAGCGGTAGTAATGCGCCTCCTTTGACGACCAACAAACGCATGTACTCTCTGAGAACCAACCCTAATCGCCTAAAGAGTTGTAGGGCATGTGAGAATTGTGGTAAAGAGTTTCTATCATGGAAGTCCTTCTTGGAACATGGCAAGTGTACGTCGGATGATGCCGACGAGTCTCCCGCCTCTTCGCCGCCCGACCCGGACGATGATGATATTACGGATCAAAGAGGATATGGTTGGTCCAAGAGGAAGAGATCTTTGCGAGCAGCTacaaaagtaaataacttcaatGTCAACCCTAATTGTGGCTCGTCCAACGAGGAAGTAGACCTCGCCAACTGTTTGATGATGTTGTCCAATGCCACAGGCACGTGCGATCCTTTCATCGCCGAGCCGGAGGAATCTTGTGCCTCGGCTAGCCGAGACGAAGAGCGAAGGCCAAACCCTATGACGACGGCCATCCTAGCTAGAATTCCTttggataataataataaagccaAAGGAGTAGTAGTCAACAAGGCTTTGTTTGAATGCAAAGCATGCAAGAAAGTCTTCAATTCTCACCAAGCATTGGGTGGCCATAGAGCGAGCCACAAAAAGGTTAAGGGTTGTTACGCCGCGAGGCTCGACACCGACGATGTTCTGGGCGGCGACGACGATGTCATAACACACGAAGATCAATTTTTTCcaacaaaatcaaattcaaCCCTTCATTTTGATCAGGCCTCTAATGCGGCGGCCACTTTACTGGCTTCTTCCTCCAAGAGAAAATCTAAGGTTCACGAATGTTCCATTTGCCATCGAGTTTTCTCGTCGGGACAAGCTTTGGGAGGGCACAAGAGGTGTCATTGGATCACGTCGAACGCGCCGGACACCTCCACGTTGGCTAGGTTTCAACAACTTCAAGACCACATGGTGGAACAAATTAATAATCATTTGCCCAAGTTCGATGATCCGGAGTCATTCGATTTGAAGCTGGATCTCAACCTTCCAGCTCCGTCTCCGGATCTCGCGAACCGGCGTGatttgtcatttgtcaatattgataacaATCAAAATCACAATCATCATCGTCTCTACCAACGCCATCAACATGAAATGGACAATGACAACGACGAAGATTGtagaaacaataataataataataacaacaacaacattaaTGTTTCCGCTGTGCAAAATGTGGATGACGAAGCCGATAGTAAGGTGAAACTAGCCAAGCTAAGTGAACTAAAGGACATGAACGTAGGGAGTTCTTCGCCATGGTTGCAGGTGGGAATCGGTTCAACCGGCCGGGACTGA 1482 0.4609 MALIVDHQSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESGAMDDDEDDPASDWEDKIGGPSGSNAPPLTTNKRMYSLRTNPNRLKSCRACENCGKEFLSWKSFLEHGKCTSDDADESPASSPPDPDDDDITDQRGYGWSKRKRSLRAATKVNNFNVNPNCGSSNEEVDLANCLMMLSNATGTCDPFIAEPEESCASASRDEERRPNPMTTAILARIPLDNNNKAKGVVVNKALFECKACKKVFNSHQALGGHRASHKKVKGCYAARLDTDDVLGGDDDVITHEDQFFPTKSNSTLHFDQASNAAATLLASSSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDTSTLARFQQLQDHMVEQINNHLPKFDDPESFDLKLDLNLPAPSPDLANRRDLSFVNIDNNQNHNHHRLYQRHQHEMDNDNDEDCRNNNNNNNNNNINVSAVQNVDDEADSKVKLAKLSELKDMNVGSSSPWLQVGIGSTGRD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0289 493 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Sto6g0289 493 PANTHER OS02G0659100 PROTEIN 1 490 - -
Sto6g0289 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 321 343 IPR013087 -
Sto6g0289 493 SUPERFAMILY beta-beta-alpha zinc fingers 235 343 IPR036236 -
Sto6g0289 493 Gene3D Classic Zinc Finger 10 111 - -
Sto6g0289 493 Gene3D Classic Zinc Finger 233 343 - -
Sto6g0289 493 MobiDBLite consensus disorder prediction 424 455 - -
Sto6g0289 493 ProSitePatterns Zinc finger C2H2 type domain signature. 323 343 IPR013087 -
Sto6g0289 493 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Sto6g0289 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Sto6g0289 493 Pfam C2H2-type zinc finger 13 35 - -
Sto6g0289 493 Pfam C2H2-type zinc finger 320 345 - -
Sto6g0289 493 Pfam C2H2-type zinc finger 236 260 - -
Sto6g0289 493 MobiDBLite consensus disorder prediction 37 75 - -
Sto6g0289 493 PANTHER OS02G0659100 PROTEIN 1 490 - -
Sto6g0289 493 MobiDBLite consensus disorder prediction 113 144 - -
Sto6g0289 493 SMART c2h2final6 236 258 IPR013087 -
Sto6g0289 493 SMART c2h2final6 13 35 IPR013087 -
Sto6g0289 493 SMART c2h2final6 321 343 IPR013087 -
Sto6g0289 493 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0289 Sto-Chr6 3296744 3298225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0289 128 390 C2H2 Transcription Factor Family AT1G02040 35.955 1.41e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto6g0289 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0289 - - ahf:112720137 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0289 6 3296744 3298225 Sto6g0289 6 3296744 3298225 ECH