Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0272 ATGGCTCTTACTCTTGAATGTGCATTAATCTCATATTTTGTGTCCTTCTTACTTTTCTTCTCCATTTTTCTAGCCactccttcctcttgtttcATCCCCAGAAAGCTTCTtaatgcttcttcttcttctccttctctttctAATTGGTCACCCGCTGAGGCCACTTGGTATGGAAGCCCCACCGGCGCCGGAAGTGATGGGGGTGCTTGTGGATATGGAACTGCGGTGGACCAACCTCCATTCTCTGCAATGATATCAGCAGGAGGCCCTCCTTTGTATGAATCAGGCAAAGGCTGTGGTGCTTGTTATGAGgtGAAGTGCACAAGTGAGAATTCGGCGTGCTCCGGCACGCCGGTGAAGGTGGTGATCACGGATGAGTGCCCGGGCTGCGGCTCGGCCGACAAAGTCCACTTCGACTTGAGTGGCACGGCCTTCGGTGCCATGGCTGTTTCCGGTCAGGCTCAGAAGCTACGTGACGCTGGGATTTTGCAGATTCAACACAGAagAGTGGAGTGCAACTATCGTGGCACGTCGCTAACGTTCCACGTGGACGCAGGCTCGAACCCGAACTATTTCGCATGCCTAATCGAGTACGAGGACGGGGATGGTGATCTGGCCAAGGTTGAAATAAAGGAAGCACTAGACTCCGCCGCATGGATGCCCATGCAGCAATCGTGGGGTGCTGTGTGGAAGCTCGACGCCGGGTCGTCACTCAAAGCGCCGTTCTCGTTGCGGCTAACGACGGTGGAGTCTGGCGAGAGTATTGTGGTTAATAATGTAATCCCTGCAGGATGGCAGCCTGGCCAGACTTACCGATCATTAGTTAATTTTCAAACCTAA 840 0.5 MALTLECALISYFVSFLLFFSIFLATPSSCFIPRKLLNASSSSPSLSNWSPAEATWYGSPTGAGSDGGACGYGTAVDQPPFSAMISAGGPPLYESGKGCGACYEVKCTSENSACSGTPVKVVITDECPGCGSADKVHFDLSGTAFGAMAVSGQAQKLRDAGILQIQHRRVECNYRGTSLTFHVDAGSNPNYFACLIEYEDGDGDLAKVEIKEALDSAAWMPMQQSWGAVWKLDAGSSLKAPFSLRLTTVESGESIVVNNVIPAGWQPGQTYRSLVNFQT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0272 279 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Sto6g0272 279 PRINTS Major pollen allergen Lol pI signature 108 118 IPR005795 GO:0005576|GO:0019953
Sto6g0272 279 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Sto6g0272 279 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Sto6g0272 279 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Sto6g0272 279 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Sto6g0272 279 Gene3D - 174 278 IPR036749 -
Sto6g0272 279 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Sto6g0272 279 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Sto6g0272 279 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Sto6g0272 279 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Sto6g0272 279 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Sto6g0272 279 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Sto6g0272 279 PANTHER EXPANSIN-B3 11 278 - -
Sto6g0272 279 SUPERFAMILY PHL pollen allergen 178 273 IPR036749 -
Sto6g0272 279 SMART dpbb_1 85 167 IPR007112 -
Sto6g0272 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
Sto6g0272 279 SUPERFAMILY Barwin-like endoglucanases 40 176 IPR036908 -
Sto6g0272 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 177 IPR007112 -
Sto6g0272 279 Pfam Lytic transglycolase 86 166 IPR009009 -
Sto6g0272 279 PANTHER EXPANSIN-B2-RELATED 11 278 - -
Sto6g0272 279 Gene3D - 35 173 IPR036908 -
Sto6g0272 279 Pfam Expansin C-terminal domain 180 262 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0272 Sto-Chr6 3124696 3127500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0272 28 277 Expansin Gene Family AT1G65680 64.000 2.30e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0272 - - jre:109015962 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0272 6 3124696 3127500 Sto6g0272 6 3124696 3127500 ECH