Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0266 ATGAGCCAGTGTGTTCCTAGCTGGGATGTTGATGAAATTCCCAGAGCCCCACATCGATCAAATTCAAATTCCACTGCTACTGATGTTCCTATGTTGGATTATGAAGTAGCCGAGCTTACATGGGAGAATGGGCAGTTATCGATGCACGGTTTAGGACTGCCGCGAGTACCCgccgccgccgccgccaccgtCCCTTCGAAGTACGCCTGGGAGAAGCCTCGGGCAAGTGGAACGTTGGAGTCCATAGTCAACCAGGCCACTGGCTTGCCCCACCGCAGTAAATCCGTGTTTGACGGCGGCGCCGGAGCCGGCGATGGGGACGACTTAGTTCCGTGGTTTGACCCCCAGAGAGCAACGTCGAACGCGGTGGCTATGGACGCGATGGTGCCCTGCTCGAACAGGACGGGAGGCGGCCGCGGCGTGATCGGCACGTGCGTGGTGGGGAGCTCGACACGCGTGGGATCTTGTAGTGGGCCCGGCGGCGGCGGCGGTCACGAGTGGAGCAGCAGGGATCAGAGCGTGAGTGGGAGTGCTGCTACGTTTGGAAGAGACAGCCAGCACGTGACGTTCGACACATGCGATAGGGAATTGGGCGTGGGGTTCACTTCCACGTCcatgggttcgccggaaaatacCAGCTCCGCCGCCAAGCAGTGCACCAAAACCACCGCGGCCGACGACCATGATTCGGTCTGTCACAGTAGATCACAGtttgttctaCAGAGAGATACAGGAGATGAAGATGAGGAGGAGGACAAAAAGAAAGGAACTGGAAAATCTTCAGTGTCCACTAAAAGGAGCAGGGCTGCAGCTATACACAATCAGTCTGAGAGGAAAAGAAGGGATAAGATAAATCAAAGGATGAAGACACTACAAAAGTTGGTCCCAAATTCCagcaagACTGATAAAGCTTCAATGCTGGATGAGGTGATAGAATATCTCAAACAATTGCAAGCACAAGTGCAAATGATGAGTAGGATGAACATGTCTTCCATGATGTTGCCAATGACTATGCAACAACAACTTCAAATGTCTATGATGGCTCCAATGGGCTTAGGAATGGGCCTGGGTATGGGTATGGGCTTGGGTATGGACACGAATGCCATCGGTCGTGCTAACATCGCCGGAATTCCTCCCGTTCTCCATCCTTCCGCTTTTATGGCGCCTATGGCCCCGTGGGATACTTTTGCCACCGGCAATGATCGAATGCAAGGGGCTTCGCCGGCGGCAGCGGCGACAATGATGTCGGATCCCATGTCGGCATTCCTAGCAATGCAGTCACAGcCAATGACAATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAACTGCATCAACCTCCAGCTTCTAGTTCCAAGAGCTGA 1368 0.5139 MSQCVPSWDVDEIPRAPHRSNSNSTATDVPMLDYEVAELTWENGQLSMHGLGLPRVPAAAAATVPSKYAWEKPRASGTLESIVNQATGLPHRSKSVFDGGAGAGDGDDLVPWFDPQRATSNAVAMDAMVPCSNRTGGGRGVIGTCVVGSSTRVGSCSGPGGGGGHEWSSRDQSVSGSAATFGRDSQHVTFDTCDRELGVGFTSTSMGSPENTSSAAKQCTKTTAADDHDSVCHSRSQFVLQRDTGDEDEEEDKKKGTGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSRMNMSSMMLPMTMQQQLQMSMMAPMGLGMGLGMGMGLGMDTNAIGRANIAGIPPVLHPSAFMAPMAPWDTFATGNDRMQGASPAAAATMMSDPMSAFLAMQSQPMTMDAYSRMAAMYQQLHQPPASSSKS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0266 455 PANTHER TRANSCRIPTION FACTOR UNE10 1 455 - -
Sto6g0266 455 Coils Coil 274 294 - -
Sto6g0266 455 MobiDBLite consensus disorder prediction 154 181 - -
Sto6g0266 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Sto6g0266 455 MobiDBLite consensus disorder prediction 201 283 - -
Sto6g0266 455 MobiDBLite consensus disorder prediction 201 221 - -
Sto6g0266 455 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 455 IPR031066 -
Sto6g0266 455 Pfam Helix-loop-helix DNA-binding domain 273 318 IPR011598 GO:0046983
Sto6g0266 455 Gene3D - 263 329 IPR036638 GO:0046983
Sto6g0266 455 MobiDBLite consensus disorder prediction 240 259 - -
Sto6g0266 455 MobiDBLite consensus disorder prediction 1 26 - -
Sto6g0266 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Sto6g0266 455 SMART finulus 274 323 IPR011598 GO:0046983
Sto6g0266 455 CDD bHLH_AtPIF_like 268 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0266 Sto-Chr6 3007546 3012948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0266 1 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 53.084 3.22e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g0266 HLH 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0266 - - vra:106780284 524.242