Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0246 ATGGATTTTGAAGGGAACATGTTTTGTCTTAGTAAAGAACAAAATggtaataacaataacaataatagtaataataatactaatactaCTTCTACTTGGGATTTATGGGAacctatttcttcttcttcttccaattcTACCCTTCTCAACACCACTTTTTACACCGCCGATACCGCCGCCGCCATGTTTCTCCCTCAGCCCACTGATCGCGACGGCCACCACCACGACGGCGGAGGACTCaattaccaccaccaccaccaccggcaGCAGCAGCAACAGCAACCTCTCTTCTCCGGCGACGactcccatcatcatcatcatcatcacgtGCACGTGGACCCACATCTCACGTGCTTGAAGCTGGGGAAGAGGCATTATTTTGAGGACGCTAATGCCCCTCTTGGTGGTGTTGGTAGTAGTGGTAGTGGCGGCGGCGGTTTGGGGTTAGCGGGAAAGAAAGGGAGAGAGTACTACGGCGGCGGCGGAGTGGCGGCGGTGACGGCGACGGCGAGGTGCCAGGTGGAGGGGTGCCACGTGGCGCTGGGGAACGCGAAGGATTACCACCGGAGGCACAAAGTGTGTGAGATGCATTCAAAGGCGCCTAAGGTTGTGGTCTCAGGGTTGGAGCAGAGATTCTGTCAGCAATGTAGCAGgTTTCATTTGGTGTCTGAATTTGATGATTCGAAGAGGAGTTGTAGGAGGAGATTGGCTGGCCACAATGAGCGAAGAAGGAAGAGTTTTCATGACTCTCTGGGTAGGAATTCCTCTCaagAAAATAAATTGATGGTCGGAGGGTTACCATATTTCTCATCACTTTCGCCACCATTACCACCATCATCGTCATCTGGGTGTGCTCTCTCTCTTCTGTCATCGCCTAAGAGCGATCATTCTTGGCTTTCACCGGCCGATCTCTCTACAAGATGCAGTGCCGCCCTCCGAGAACTCATAGCAGAAAATCGAGCCGCGATCATGGCGAAGCAGATCATTCTAGACAAAGATTGGAATCCTCACCCCTAccatgcaatagaagaagatgacGATGACGACGACGATGACTTTAAGGAGATCCAAACTCATTCAAACTATAATTTCCCACCACAACACCACCAAATGTTTCCCTAG 1122 0.4501 MDFEGNMFCLSKEQNGNNNNNNSNNNTNTTSTWDLWEPISSSSSNSTLLNTTFYTADTAAAMFLPQPTDRDGHHHDGGGLNYHHHHHRQQQQQQPLFSGDDSHHHHHHHVHVDPHLTCLKLGKRHYFEDANAPLGGVGSSGSGGGGLGLAGKKGREYYGGGGVAAVTATARCQVEGCHVALGNAKDYHRRHKVCEMHSKAPKVVVSGLEQRFCQQCSRFHLVSEFDDSKRSCRRRLAGHNERRRKSFHDSLGRNSSQENKLMVGGLPYFSSLSPPLPPSSSSGCALSLLSSPKSDHSWLSPADLSTRCSAALRELIAENRAAIMAKQIILDKDWNPHPYHAIEEDDDDDDDDFKEIQTHSNYNFPPQHHQMFP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0246 373 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Sto6g0246 373 MobiDBLite consensus disorder prediction 236 256 - -
Sto6g0246 373 Pfam SBP domain 172 245 IPR004333 GO:0003677
Sto6g0246 373 MobiDBLite consensus disorder prediction 337 373 - -
Sto6g0246 373 MobiDBLite consensus disorder prediction 67 109 - -
Sto6g0246 373 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Sto6g0246 373 Gene3D - 164 233 IPR036893 GO:0003677|GO:0005634
Sto6g0246 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 29 371 - -
Sto6g0246 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 371 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0246 Sto-Chr6 2778111 2782217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0246 113 245 SBP-box Gene Family AT5G43270 54.887 8.22e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto6g0246 SBP 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0246 - - gmx:100806582 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0246 6 2778111 2782217 Sto6g0246 6 2778111 2782217 ECH