Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0238 ATGTTGGACTACGAATGGGGGAATCCCAACACTATAATGCTCACCGGCAACGACGAGGCGGCGGTGGCGGATTCCGACCATAATAACCACCGTCAAATCTTCGACCACTACGCGTTCTTGCCGGACCATCTCATTTCTCAGGCGCCGGCGGGGCCCACACCAACGACCACCAACACCGCCGTGGATTTCTCCCTACAGTACCATCACCTTAACCTGCAGGCTCACCACCAGCACTCGCTCTTCGACCCACGCGCCTTCCATGGCGCGTCGTCTTCCCCGTTCCATCCTCCTCCACCCCAGCCTCAACCACCACCgcctcctcatcatcatcatcatcactctATGTTCTCGCTTGACCCGCTGCCTCCGGTCAACGGTGGGAGCAACTGTGGGCCCGGTGGGCTTCTGGTGGTGCCGAAGTCCGAGGAGGTGGGTCGGCCCATGGACTTCGCGGCGTCTCGAATTGGGCTGAACCTGGGCGGCCGGACGTACTTCGCTTCGTCCGAGGACGACTTCGTGAGCCGGCTCTACCGCCGGTCCAGGCCGATGGGGGCGGAAGGGGTGGTGGGCTCGGCGACGACGACGACGTCGTTTAGCAACAGTAACTCGTCCCCGAGATGCCAAGCTGAGGGATGTAATGCGGATCTGTCCCACGCGAAGCACTACCACCGCCGACACAAGGTGTGCGAGTTTCACTCCAAGGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTCCATCTTCTGTCGGAGTTCGATAACGGAAAACGTAGCTGCCGGAAAAGGCTGGCGGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCATCGAGTCTTCAAGAAACCCAGAAATCCCACCTCGATAATACTCGCAATTCTACTTTGGACACTAGTCTCGCAAGGTCCCCACCGGAATCTGGAGCTCAGACATCTTCATCGGTGACGGTGGCAGTGTCGCCGCCGGACTATTTCCGGCAAAGGCCGTATCAAAGTACAAGCTCTTCAACAACATCAAGCACACTGTTTTTCTCAAGTGGgtag 1065 0.57 MLDYEWGNPNTIMLTGNDEAAVADSDHNNHRQIFDHYAFLPDHLISQAPAGPTPTTTNTAVDFSLQYHHLNLQAHHQHSLFDPRAFHGASSSPFHPPPPQPQPPPPPHHHHHHSMFSLDPLPPVNGGSNCGPGGLLVVPKSEEVGRPMDFAASRIGLNLGGRTYFASSEDDFVSRLYRRSRPMGAEGVVGSATTTTSFSNSNSSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSSLQETQKSHLDNTRNSTLDTSLARSPPESGAQTSSSVTVAVSPPDYFRQRPYQSTSSSTTSSTLFFSSG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0238 354 ProSiteProfiles Zinc finger SBP-type profile. 204 281 IPR004333 GO:0003677
Sto6g0238 354 Gene3D - 197 268 IPR036893 GO:0003677|GO:0005634
Sto6g0238 354 MobiDBLite consensus disorder prediction 270 354 - -
Sto6g0238 354 MobiDBLite consensus disorder prediction 83 124 - -
Sto6g0238 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 95 338 - -
Sto6g0238 354 MobiDBLite consensus disorder prediction 284 354 - -
Sto6g0238 354 SUPERFAMILY SBT domain 205 283 IPR036893 GO:0003677|GO:0005634
Sto6g0238 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 338 IPR044817 GO:0003677
Sto6g0238 354 Pfam SBP domain 207 280 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0238 Sto-Chr6 2715030 2717050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0238 1 254 SBP-box Gene Family AT1G02065 45.221 8.95e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto6g0238 SBP 1e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0238 6 2715030 2717050 Sto6g0238 6 2715030 2717050 ECH