Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0196 ATGGCGTCGAGGAATCAACCTCTTACTTCCATGAATCCGATGCAGCACCGAGATACAACTGTCAAAATGCGAGTTGTTTGTTTGTGGTGTGTTCCGCCTTACTCCTCCAATATGAGCAAACCTAATCCAGGTGCTATTGCAATTCAAATGGTTTTATGTGACTCTGAGAATTGCACTATTGGTGCAAGTGTACCCAGTATGTACCTGAATAAATTCAAAGGTTCTTTGGTTGAAGGTGGAGTTTACTTTATTTCACGTTTTGGAGTTGGTGGTAGTGGAGGAAATTTTCGTATTACCACTCATGCTTTTAAGATCAACTTCCAATTTGGTACACGCGTAATGCCCACTGTTGATGACCCTAAGATTCATAAATATGGCTTTGAGTGGGTGACAGCAGAATCTATAACCTCTGGCAATGCAGACGAGAAAACTTTGGTTGATGTCATTGGTTTGCTCACTAACATAGGAGATGTCATCCAGTCTTCTAAAGATGACGTCTCCTCCAAAAGAGTTACGATTGAGATAGAAGATAGAgcAAGGTCCAGGGTGAGTGCTACGCTTTGGGGACGTTACTGTGATCAGATTGAAAAGTTAATGAACAAGCATAAAGAAGGTGTTGTTGTTATTGCTTTGCAATACTGCAAGATCAAAGTATTCAATGGTCAGCGTAGTCTTTCCAATTCCATGCATGCTACGCGTATCCTGATCAACGAAGATCTTGAAGAATTCATGGGATTTCATGATCAAGTTTCTGGATCCAATCTGAAAAGTCCTTTGATAGGAAGTTCTTCGTCATCTGTCAAATATGTTTCACATTATGCTGATCCTTTTAATGCAGTATCCCTCTCATGCATTAGTGAGCTTCTCCTCTCTGCAGATGAGTCTGTTCATTGTATTATTGGTTCTGTGCTCAAGGTTAACACAGATAAAGCTTGGTTTTATAATGCTTGCACAAAATGTAAAAGGAAAGTTGAGGAAGATGGTGAAAGCTTCTACTGTAATCACTGTTCATCCCCGATGTCCATTGTCATCCCGATGTTTAGGCTTGAGTTGGTCGTAATTGATGACACTGCTCCTactaattttactttatttgatCGTGATGCAGCAAAGTTTTTGGGAGCAACTGCAGAATTTATGAAGAACAAAGCAGAAAAGGTTGATGATGATTCTATGCAGTTCTTAGCCGAGTTTGACAAGTTTCTTGGTATACGTTTTGTGTTCAAGGTGGGGGTGAAATTGGCAACGTGGAGTCCTACTCCTTTGTTAACAGTCCAGACAATGTCTTGGGATCAAAACCTTATTAAGAAGCTATCAGCTGAGTCACCTCTAGATGTGGTTGCAAGTGACCAAAATGGTGATACGAATATTGGCTCGAGTTACTCCCAAGATGTCATTGGTGTTGTCGTTTCTTCTGAGAATTTAATTCCTAATCAAGAAGCTGGGAAGATTAATCTTGACAAAGAATCAGCGAACCCAAACTATGCTGTGGAAGGTCGTTCTTTGTCATTTTCTGAAGAAGTTACATCTGAGGATCGTTGCACTACTAGCAGTAACATGGGGAATTCATCTGAAGAGTCCAATACTAAGAGAAGAGCCAATGACTTTAATGAAGTCAACACTGTTAGCCTAGATGTTCTTAAGAAAGTAAAACTGGAGAAGTTgtttagggttaccGCTGCCATTTCTTCTCAGTCAAAAACTTCCGTATCATCTTCTATCCTTCCAAGACATCCAACTCTTGGGTTCTATCTCAAGGACCGTGAATTTGATTCAAAAGAAATATTAACCCATCTTCCACCACTACCTACAGATGTTTCTGATCGTTTTGCAAAATTGACTGGGGTAGTCAATGGCATCCTCTGCGTGGATTTTGCAATTCCCGCTGCTGAAGAAATATATTCACTCTGCAACATTACAAATTCATCTTTCCTTATGGTCCCATCTATTCAACCTGCATCAGATAAtgGTAAAGTCTTATCAATATTTGGTGCCAACTCTTCTACTGGTCATGAGTCCATAGTCAGAATGTGGAAGGATGAGCTTCATGGCATTCCTTCGTCTCTTTCGGTTTACGATACCTTACATCACATGTGGTCACCTATACAACAACATTTATTAGATGtctctcaaatatatgataGATATATTCACATCAACGGCATTCAATATTGGATTTCTGCAACAGAGACTGCTGACACCTCCAACTGTAAGAAATTACTTATTGCATTCAATATTGCAGAAAGGACATGGGTCAATTATGATCTTTCCATCAACATGGTTGGTGATCAGTTTTACTTTTGTGAAGTAGATGGACTTGTGGGTATCATTACTTGGACTTCTGGAAGTTTGGAGATTACTATGCATTATAATCACTTTGTGAAGCGCAACTCATCTAATGGGACAACAATATTCCGTAGGGTCAAAGGCGTTAAAGATGTTCCAACTTTCCTGAATTTCCTTACTTATAGGAATGATAAGTTTGTCTTTCATTGTGACAATCATTTTCAGGTTGATTTGAACAAGGACGTTTGTTACAAGGACGTCTTCAGCTTTCCAAGAGGTGAACTATGTGACACGGAGAAGATTGCTGTCCCCAAGCAACATAAGACCAAAGTACAGAAATCTTCTGATGATGTTCCTATTCAATATTTTGGTTTCGATTTTGTTAACTTTCGTTCCATTAGATGTGGTGTAGTTGATTCCACCCTTCTTATTgGTCTGGTCCGCAACATTTTCAACATTCGTCGTAAGTTTTCTGACAATTTTCAGACAAATCGTATACCTATTGAAATCTACGATGCATGTGGTAATGTGCTGCAAGTTGTTTTGTGCGGCATCCATTGTCAGAATTTTAGAATCTTTATTCGTAATTTTAGTGGAGGTAGGATTATCGTTGCTATTCAGTGGTGCAAAGTAGCTAATTTTCATGGTTCAAAATATCTGACTACTTCTATGGAAGCCACACGTCTATTGATTAATGAGGACATCACCCGTTTTGATAATCTTCCTATAGAATTTCAACAATTGGAGTTGAAACCAGATAATTTCCGAAACATTCATTTGGCACATGTTTCTTCTGAACTTTCGGAAGAACCTTTCAACGATATTCAATTGAATACCATAagtgaattatatatatcatccgAATATTCTGTGCACTTCATACTTGCAACTGTTATTAAGGTTAATACATCAAcggattggtattattatgcTTGTGACTTCTGCATGGAGGAGTTGGATCTTGAGGACGATTGCTATTATTGTTACTCATGTGGTAAATCAATTTCTACACCTTCaattaagtataaaattaaTGTTGAAGTTGTTGACTACACTGGTTGGgcaagattaattattttagatccTGATGCGTCAAACTTTCTCATGACTGATGCTTCAAAACTCCTTTGCCGAGAGCTTACTGATGACCCACTTAAACACACAAATATGCTAGAAAATTTAACCCATAAGGTGTTTCTGTTTAAAATATTCATGAATGAAGCCTCTTGCGTTCCAACACCATCATTTGAAGTTATAACTATGTCTTGGGATGCATCCTTGATTGAGAAGTTGTCAGACAAGGTTATACCAACGTCCGATGTTGAAAGTGATGAAAAATCACAGAATGAGATCTCTTCCACATTTCCCGTATTCAACTCTACTAATCAACTTACTAGACCACATAACGATCAGGCAACATCATTGAATAAGTGCTACACATTAGGAGACGTCACTTATTCTAAGATTGCTTACACATTAGATCAACCATATTCGGAAAATCATCATACCATTGAAATTGATTGA 3810 0.373 MASRNQPLTSMNPMQHRDTTVKMRVVCLWCVPPYSSNMSKPNPGAIAIQMVLCDSENCTIGASVPSMYLNKFKGSLVEGGVYFISRFGVGGSGGNFRITTHAFKINFQFGTRVMPTVDDPKIHKYGFEWVTAESITSGNADEKTLVDVIGLLTNIGDVIQSSKDDVSSKRVTIEIEDRARSRVSATLWGRYCDQIEKLMNKHKEGVVVIALQYCKIKVFNGQRSLSNSMHATRILINEDLEEFMGFHDQVSGSNLKSPLIGSSSSSVKYVSHYADPFNAVSLSCISELLLSADESVHCIIGSVLKVNTDKAWFYNACTKCKRKVEEDGESFYCNHCSSPMSIVIPMFRLELVVIDDTAPTNFTLFDRDAAKFLGATAEFMKNKAEKVDDDSMQFLAEFDKFLGIRFVFKVGVKLATWSPTPLLTVQTMSWDQNLIKKLSAESPLDVVASDQNGDTNIGSSYSQDVIGVVVSSENLIPNQEAGKINLDKESANPNYAVEGRSLSFSEEVTSEDRCTTSSNMGNSSEESNTKRRANDFNEVNTVSLDVLKKVKLEKLFRVTAAISSQSKTSVSSSILPRHPTLGFYLKDREFDSKEILTHLPPLPTDVSDRFAKLTGVVNGILCVDFAIPAAEEIYSLCNITNSSFLMVPSIQPASDNGKVLSIFGANSSTGHESIVRMWKDELHGIPSSLSVYDTLHHMWSPIQQHLLDVSQIYDRYIHINGIQYWISATETADTSNCKKLLIAFNIAERTWVNYDLSINMVGDQFYFCEVDGLVGIITWTSGSLEITMHYNHFVKRNSSNGTTIFRRVKGVKDVPTFLNFLTYRNDKFVFHCDNHFQVDLNKDVCYKDVFSFPRGELCDTEKIAVPKQHKTKVQKSSDDVPIQYFGFDFVNFRSIRCGVVDSTLLIGLVRNIFNIRRKFSDNFQTNRIPIEIYDACGNVLQVVLCGIHCQNFRIFIRNFSGGRIIVAIQWCKVANFHGSKYLTTSMEATRLLINEDITRFDNLPIEFQQLELKPDNFRNIHLAHVSSELSEEPFNDIQLNTISELYISSEYSVHFILATVIKVNTSTDWYYYACDFCMEELDLEDDCYYCYSCGKSISTPSIKYKINVEVVDYTGWARLIILDPDASNFLMTDASKLLCRELTDDPLKHTNMLENLTHKVFLFKIFMNEASCVPTPSFEVITMSWDASLIEKLSDKVIPTSDVESDEKSQNEISSTFPVFNSTNQLTRPHNDQATSLNKCYTLGDVTYSKIAYTLDQPYSENHHTIEID 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0196 1269 SUPERFAMILY Nucleic acid-binding proteins 7 123 IPR012340 -
Sto6g0196 1269 Gene3D - 881 1011 IPR012340 -
Sto6g0196 1269 Gene3D - 121 256 IPR012340 -
Sto6g0196 1269 MobiDBLite consensus disorder prediction 506 532 - -
Sto6g0196 1269 CDD RPA1_DBD_B_like 147 243 - -
Sto6g0196 1269 CDD RPA1_DBD_C 285 416 IPR013955 -
Sto6g0196 1269 Pfam Replication protein A OB domain 139 228 IPR031657 -
Sto6g0196 1269 SUPERFAMILY Nucleic acid-binding proteins 1040 1168 IPR012340 -
Sto6g0196 1269 CDD RPA1_DBD_A_like 20 113 - -
Sto6g0196 1269 PANTHER BNAC01G35430D PROTEIN 1051 1170 - -
Sto6g0196 1269 PANTHER BNAC01G35430D PROTEIN 45 411 - -
Sto6g0196 1269 SUPERFAMILY Nucleic acid-binding proteins 887 1003 IPR012340 -
Sto6g0196 1269 SUPERFAMILY Nucleic acid-binding proteins 127 249 IPR012340 -
Sto6g0196 1269 SUPERFAMILY Nucleic acid-binding proteins 288 419 IPR012340 -
Sto6g0196 1269 Gene3D - 4 115 IPR012340 -
Sto6g0196 1269 MobiDBLite consensus disorder prediction 508 527 - -
Sto6g0196 1269 Gene3D - 276 440 IPR012340 -
Sto6g0196 1269 Gene3D - 1024 1188 IPR012340 -
Sto6g0196 1269 PANTHER REPLICATION FACTOR A 1, RFA1 1051 1170 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g0196 1269 PANTHER REPLICATION FACTOR A 1, RFA1 45 411 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g0196 1269 CDD RPA1_DBD_B_like 905 998 - -
Sto6g0196 1269 Pfam Replication factor-A C terminal domain 1058 1168 IPR013955 -
Sto6g0196 1269 Pfam Replication factor-A C terminal domain 300 421 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0196 Sto-Chr6 2330703 2339461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0196 4 418 Core DNA Replication Machinery Family AT5G45400 22.426 3.71e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0196 - - adu:107490971 189.119