Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0131 atgcAAGGGAAGAAGGATCAAGGAGGGCCTATCAGAAAAGGGCCATGGAAAGCCGAGGAAGACGAGGTGCTTCTCACTCACGTGAACAAGTACGGTCCCCGAGACTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAACGCACCGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGTCCAAATCTTAAGAATGGATGCAAATTTACGGCTGAGGAAGAGAGGGTGGTGATAGAATTGCAGGCACAGTATGGGAACAAGTGGGCCAAGATTGCGTTGCATTTGCCGGGTAGAACAGACAACGATGTGAAGAATTTCTGGAGTAGTAGGCAGAAGAGGCTCGCTAGGATTCTTCAGACTTCACCATCAACAACAACACCGTGTTCCTCCACCAAATCTCATAAGAAGAACAAGAATATTAGTATTAAGGTTCCCACTTTTCATCACCTTGTTCCTGCTCTTGAGGCTCCAAAGTTCAGTTCATCATCAGAGGAAGAATCATCATTAAAGGCTCATCAGTCATGCTCCTCAATATCCCTCATTGAGAATTCAGCGGCCATAAAAATGGTGCCATTACCAGATCCCATGAACTCCAAGCCATTGAATTCTTACACAAACATGGTTAAACAAGAGTTTACTACTCCTTTTGAGAGCTATGCAAGCACTGATTTAAGCTCAGAAATTGCTTTCCCTCAGGTATTCCCATTCTCAATGGAAGGTCAAGACCTCTTGGACAGAACAAGTGAGCCTAGTAACTTCATTGATGGATTTGGATCATTGGATATTGCATCTGAACTTGGAATAGGAGCACAAATTCCCATTGGGCTACCTTTCTTTGAACCATCAGGAAATTGCAATATTGGGACGAGGGATTCAATTGGTAACCCCACAAATCCTGATAGCTTTTTCGATGACTTCCCTGAAGATATGTTTGATGATATGCAGCCACCTCCAAGTCCATCGGAGTTGTGA 975 0.4421 MQGKKDQGGPIRKGPWKAEEDEVLLTHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTAEEERVVIELQAQYGNKWAKIALHLPGRTDNDVKNFWSSRQKRLARILQTSPSTTTPCSSTKSHKKNKNISIKVPTFHHLVPALEAPKFSSSSEEESSLKAHQSCSSISLIENSAAIKMVPLPDPMNSKPLNSYTNMVKQEFTTPFESYASTDLSSEIAFPQVFPFSMEGQDLLDRTSEPSNFIDGFGSLDIASELGIGAQIPIGLPFFEPSGNCNIGTRDSIGNPTNPDSFFDDFPEDMFDDMQPPPSPSEL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0131 324 Gene3D - 68 145 - -
Sto6g0131 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 56 IPR017930 -
Sto6g0131 324 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Sto6g0131 324 Pfam Myb-like DNA-binding domain 13 58 IPR001005 -
Sto6g0131 324 MobiDBLite consensus disorder prediction 290 324 - -
Sto6g0131 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto6g0131 324 SMART sant 66 114 IPR001005 -
Sto6g0131 324 SMART sant 12 62 IPR001005 -
Sto6g0131 324 CDD SANT 69 108 IPR001005 -
Sto6g0131 324 CDD SANT 15 60 IPR001005 -
Sto6g0131 324 PANTHER TRANSCRIPTION FACTOR DUO1 1 323 - -
Sto6g0131 324 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Sto6g0131 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Sto6g0131 324 Gene3D - 13 65 - -
Sto6g0131 324 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0131 Sto-Chr6 1636762 1638824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0131 1 321 MYB Transcription Factor Family AT3G60460 46.687 1.19e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g0131 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0131 K09422 - gmx:100805384 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0131 6 1636762 1638824 Sto6g0131 6 1636762 1638824 ECH