Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0117 ATGGCTGAGAAAGAAgagggcttagggttagggttgagTTTGAGCTTAGCTTGTGGAGGAAATTCCATCAACATTAACACTTCAACAACACAATCTCTTCCCAATCAGAGAACTTCCTGGAATGATATTTTTCACTTACCTGATCGGAGCTCCGAGACAAGGTCGTTCCTGCGAGGAATAGATGTGAATTTGGAACCGCCGCCGTCGGTGGCGGTGGATtgcggcggcggcggaggagACGAAGAAAACGGCGGCGTTTCCTCGCCGAACAGTACGATATCGAGTATCAGTGGGAAGCGGAGCGAGAGGGAGCCGAACGGAGACGAGAACGACGTCGCCGAGAGGACGACGACGACGTCGTGCTCCCGAGGAAGCGATGACGAGGACGGGGACGGCGGCGCCGGCGGGGGCGACGACGGTGGTGGTGAGACTTCGAGGAAGAAGCTTAGGCTCTCGAAGGAACAGGCTGTGGTGTTAGAGGAGACGTTCAAGGAGCACAATACGCTCAATCCGAAACAAAAGCAGGCATTAGCGAAGCAACTGAATCTGAGGCCAAGACAAGTGGAAGTGTGGTTTCAGAACAGAAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGAATCTTACTGAGGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAAATGTCTCCACAACTCTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGCGAGCGAGTAGCCGTCTCATCAGCGTCCTCCTCCTCGTCGACGGCTACCACAACCACCCCATCTGGGGTtgtgccgccgccgccgccatcGAATCGCAATGCATTGAGCTCTAATATCCAGCGGCCAAACCCGTGGGCGGCAATGCTGGCCCAACACCGGCGACCGTGA 939 0.4963 MAEKEEGLGLGLSLSLACGGNSININTSTTQSLPNQRTSWNDIFHLPDRSSETRSFLRGIDVNLEPPPSVAVDCGGGGGDEENGGVSSPNSTISSISGKRSEREPNGDENDVAERTTTTSCSRGSDDEDGDGGAGGGDDGGGETSRKKLRLSKEQAVVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKMSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSTATTTTPSGVVPPPPPSNRNALSSNIQRPNPWAAMLAQHRRP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0117 312 MobiDBLite consensus disorder prediction 84 100 - -
Sto6g0117 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 7 306 - -
Sto6g0117 312 MobiDBLite consensus disorder prediction 60 150 - -
Sto6g0117 312 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Sto6g0117 312 CDD homeodomain 146 203 IPR001356 GO:0003677
Sto6g0117 312 SMART HOX_1 144 206 IPR001356 GO:0003677
Sto6g0117 312 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355|GO:0043565
Sto6g0117 312 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Sto6g0117 312 Coils Coil 208 238 - -
Sto6g0117 312 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Sto6g0117 312 MobiDBLite consensus disorder prediction 265 312 - -
Sto6g0117 312 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Sto6g0117 312 PANTHER - 7 306 - -
Sto6g0117 312 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Sto6g0117 312 Gene3D - 150 200 - -
Sto6g0117 312 Pfam Homeodomain 146 200 IPR001356 GO:0003677
Sto6g0117 312 SUPERFAMILY Homeodomain-like 134 203 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0117 Sto-Chr6 1498728 1500819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0117 39 310 Homeobox Transcription Factor Family AT3G60390 61.268 1.12e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto6g0117 HD-ZIP_N 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0117 K09338 - gmx:100798480 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2138 1 29612953 29617287 Sto6g0117 6 1498728 1500819 CCT
Sto6g0117 6 1498728 1500819 Sto6g0117 6 1498728 1500819 ECH