Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0089 ATGAGTCGTAGGGTGAGGAGGAAGGTCGctagaaaaggaaaagagaaggtGGTTTTGCCATGTTACCCTGAAATCCAAGATGAGGTTTTGACTTTAGACCCTGAACGGGTTGTTGATTGGAGGAGCTTACCTGATGATACAGTAATTCAGTTGTTTTCATGTCTGAGTTATCGTGACAGAGCCAGCTTAACATCAACTTGTAGGACATGGAAGTCTCTTGGTAGCTCTCCATGTTTATGGACATCTCTTGATCTTCGCTCTCACAGGTTTGATGCCACCATGGCATCTTCTCTTGCTCCAAGGTGTGTGCATCTTCAGAGACTTAGATTTCGTGGGGCAGAGTCTGCTGATGCAATAATTCATCTTCAAGCTAGGAATTTACGCGAAATAAGTGGTGACTATTGCAGGAAGATTACTGATGCAACTCTTGCAGTAATTGTTGCTCGACATGAGTTACTTGAAAGCCTTCAGCTTGGGCCAGATTTCTGTGAAAGAATCAGTAGTGATGCTATAAAAGCAATAGCTCATTGCTGTCCTAGATTAAAGAAACTTAGACTCTCTGGCATTAGGGATGTAAATTCTGATGCCATTAATGCCCTGGCTAAGCATTGTCCAAATTTAACTGATATTGGATTCATCGACTGTCTGAATGTTGATGAGCTAGCATTGGGAAATGTGTCATCAGTTCGTTTCCTTTCAGTTGCAGGGACATCAAGTTTGAAGTGGGGTGTGGTTTCTCATCTTTGGCATAAGCTCCCTAACCTTACTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTATTTCGAGATTGTTATCCTCACAGAGCTTGAGGGTTTTGTGTGCTCTGAATTGTCCTATCCTTGAAGAAGACTCCAGCTTCTCAgcaaacaaatataaaaataagctATTAATTGCGCTCTTTACAGATATTTTTAAAGGACTAGCTGCTTTATTTTTTGATGATACAAAGAATGGAAAGAATGTGTTTTTGGACTGGAGGAACATGAAGAATAATGataaggacctaaaagaaattaTGATCTGGCTTGAGTGGATCCTATCCCATACACTTCTGCGATCTGCAGAGAGCATTCAACAGGGTCTGGATAATTTCTGGGTTGAACAAGGTGGAGCACTCTTGCTTAGTCTAATGCAGAGTCCCCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGTCTTGCAACATTTGTTGTAATTGATGATGAAAATGCTAGCATTGATTGTAGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATACGCCTCCTTCTTGGACTAGCAAAATCATGGAGGGAAGGGCTTCAGTCTGAGGTAGCTAAGGCCATTGCAAATTTGTCCGTCAATGCCAACGTTGCTAAAGCTGTTGCAGAAGAGGGTGGGATTGATATTCTTGCTGGATTGGCTAGGTCCATGAACAAGCTGGTGGCTGAGGAGGCTGCTGGAGGCTTGTGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAGGCTGGTGGAATACAAGCTTTGGTAGATCTTATATTCAAGTGGTCCTCTACTGGAGATGGAGTTTTGGAACGTGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACTGAAGTTGCTCTCGCTGGTGGTGTACATGCTTTAGTGATGCTTGCTCGCAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGCAACAATGCTGCTGTAGGACAAGAAACAGGTGCCCTAGAGGCACTTGTTCAACTTACCCGTTCTCCCCATGAAGGTGTCAGGCAAGAAGCTGCTGGTGCGCTTTGGAATTTGTCATTTGATGATAGAAATCGAGAAGCCATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTGGCCCAGTCTTGTTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTCTGGGGGTTGTCAGTTTCTGAAGCCAATAGCATTGCTATTGGGCGAGAAGGAGGCGTTGCACCTTTAATTGCACTGGCTAGGTCTGAAGCTGAGGATGTTCATGAAACTGCTGCAGGAGCTCTTTGGAATCTTGCTTTTAACCCGGGTAATGCTCTACGAATTGTAGAGGAAGGAGGAGTTTCTGCACTTGTTGATCTCTGTTCTTCATCATTATCAAAGATGGCACGTTTCATGGCTGCATTGGCATTGGCCTATATGTTTGATGGGAGAATGGATGAATTTGCTTTGTTAGGCACCTCATCAGAAGGCGTCTCTAAGAGTGTGAGCTTGGATGGAGCTAGGAGGATGGCTCTGAAACACATTGAAGCTTTCATTCTTATGTTTTCTGATCCACATGGATTTGCTGTTGCTTCTGCATCATCAGCTCCTGCAGCATTGACTCAAGTCACTGAAGGCACCCGAATTCAAGAGGCAGGGCATCTTAGATGCAGTGGTTCTGAAATTGGAAGATTTGTTGCTATGCTTCGAAATCCGTCATCAATACTAAAAGCTTGTGCTGCATTTGCTCTTCTCCAGTTTACAATTCCGGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAGAACGCAGGTGCAGCAAGAGTTCTTCGTGGCGCGGCTGCCTCTGCAACCGCCCCACTGGAAGCGAAAATATTTGCGAGAATTGTTCTTCGCAACCTCGAGTACCATCAGACAGAGCAGCAGTCAGTCTAG 2757 0.4469 MSRRVRRKVARKGKEKVVLPCYPEIQDEVLTLDPERVVDWRSLPDDTVIQLFSCLSYRDRASLTSTCRTWKSLGSSPCLWTSLDLRSHRFDATMASSLAPRCVHLQRLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPRLKKLRLSGIRDVNSDAINALAKHCPNLTDIGFIDCLNVDELALGNVSSVRFLSVAGTSSLKWGVVSHLWHKLPNLTGLDVSRTDIGPSAISRLLSSQSLRVLCALNCPILEEDSSFSANKYKNKLLIALFTDIFKGLAALFFDDTKNGKNVFLDWRNMKNNDKDLKEIMIWLEWILSHTLLRSAESIQQGLDNFWVEQGGALLLSLMQSPQEDVQERAATGLATFVVIDDENASIDCRRAEAVMRDGGIRLLLGLAKSWREGLQSEVAKAIANLSVNANVAKAVAEEGGIDILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSTGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQETGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSLSKMARFMAALALAYMFDGRMDEFALLGTSSEGVSKSVSLDGARRMALKHIEAFILMFSDPHGFAVASASSAPAALTQVTEGTRIQEAGHLRCSGSEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNAGAARVLRGAAASATAPLEAKIFARIVLRNLEYHQTEQQSV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0089 918 Gene3D - 381 519 IPR011989 -
Sto6g0089 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Sto6g0089 918 Gene3D - 521 587 IPR011989 -
Sto6g0089 918 Pfam F-box-like 40 86 IPR001810 GO:0005515
Sto6g0089 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 584 IPR000225 GO:0005515
Sto6g0089 918 Gene3D Ribonuclease Inhibitor 33 313 IPR032675 -
Sto6g0089 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Sto6g0089 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Sto6g0089 918 SMART arm_5 629 672 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 588 628 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 714 755 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 673 713 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 457 497 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 542 583 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 498 541 IPR000225 GO:0005515
Sto6g0089 918 SMART arm_5 417 456 IPR000225 GO:0005515
Sto6g0089 918 SUPERFAMILY ARM repeat 377 743 IPR016024 -
Sto6g0089 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 726 IPR000225 GO:0005515
Sto6g0089 918 PANTHER PROTEIN ARABIDILLO 1 1 914 IPR044583 -
Sto6g0089 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Sto6g0089 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 685 IPR000225 GO:0005515
Sto6g0089 918 Gene3D - 678 760 IPR011989 -
Sto6g0089 918 Gene3D - 588 677 IPR011989 -
Sto6g0089 918 PANTHER PROTEIN ARABIDILLO 1-LIKE 1 914 - -
Sto6g0089 918 SUPERFAMILY RNI-like 50 292 - -
Sto6g0089 918 SMART LRR_CC_2 124 149 IPR006553 -
Sto6g0089 918 SMART LRR_CC_2 252 276 IPR006553 -
Sto6g0089 918 SMART LRR_CC_2 204 229 IPR006553 -
Sto6g0089 918 SMART LRR_CC_2 178 203 IPR006553 -
Sto6g0089 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 554 IPR000225 GO:0005515
Sto6g0089 918 Pfam Armadillo/beta-catenin-like repeat 629 671 IPR000225 GO:0005515
Sto6g0089 918 Pfam Armadillo/beta-catenin-like repeat 499 541 IPR000225 GO:0005515
Sto6g0089 918 Pfam Armadillo/beta-catenin-like repeat 595 627 IPR000225 GO:0005515
Sto6g0089 918 Pfam Armadillo/beta-catenin-like repeat 552 583 IPR000225 GO:0005515
Sto6g0089 918 Pfam Armadillo/beta-catenin-like repeat 462 496 IPR000225 GO:0005515
Sto6g0089 918 Pfam Armadillo/beta-catenin-like repeat 675 712 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0089 570 757 U-box Gene Family AT2G23140 35.979 7.78e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0089 - - gmx:100819086 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0089 6 1198527 1212289 Sto6g0089 6 1198527 1212289 ECH