Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0041 ATGGATCACAACACAGCTTTTGACTATGATCTTTCTTTTCTAGAATCTATCCGAAGCTACCTTCTGGACGAGGATTCCGATCCTTTCATGGCCACATTCGCCGCCGGCGATGCTCCGGCCAGCTTCGACATCAGTTCTAGCAGCTCCGGCACGACGGAGAAGAGCGATAGCCACGACAATATTAACTCTCCGTCTTTTTCGTCGGAACCGACGAACATTGCCGGCGTGGAGGTTTCAAGTAGTAATGATACTCATACTAGCAACGGGGCAGCGGTGGCGCGTGGGTCTCACGCGCCGCGGAGTGGCGGCAATTACAGGGGAGTGAGGCGCCGGCCGTGGGGGAAATACGCCGCGGAGATTAGAGATCCCAAGAAGAACGGCGCCAGGGTGTGGCTCGGGACTTACGAGACGGCTGAGGATGCGGCTTTGGCTTATGATCGAGCCGCTTTCAAGATGCGCGGCTCCAAAGCTAAGCTGAATTTTCCGCATCTTATTGGATCGGATGTGTTGGAACCGCCCAGAGTGACCGGAAAGCGCCGGTTTCCGGAGCCTTGTTCCCCGTCATCGGAGGATGAGTCCCCTGAGCTGAAAAGGAGGATGAGCCGAGTGATTAGTATATTGGACACATCTGAGCCGAGTAATAGAAGCCAAGCCGAGGAGTTGGGTATGGGGTCCATAGGAATTTATGAGCAAATATTGAATGATACTACAAGCAATGACCTAATATGGTGTTTTCAAGACCAATTTCATAATCATGGGGAACAACGAAGAAGGATAGCCGAGGATGCTCCCGCGTCTCAGAGGGGACAAATTCAGAAACGAGGGCAGACTACCCAGAGGAAGAGGTAG 849 0.5289 MDHNTAFDYDLSFLESIRSYLLDEDSDPFMATFAAGDAPASFDISSSSSGTTEKSDSHDNINSPSFSSEPTNIAGVEVSSSNDTHTSNGAAVARGSHAPRSGGNYRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDVLEPPRVTGKRRFPEPCSPSSEDESPELKRRMSRVISILDTSEPSNRSQAEELGMGSIGIYEQILNDTTSNDLIWCFQDQFHNHGEQRRRIAEDAPASQRGQIQKRGQTTQRKR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0041 282 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Sto6g0041 282 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
Sto6g0041 282 MobiDBLite consensus disorder prediction 175 198 - -
Sto6g0041 282 MobiDBLite consensus disorder prediction 255 282 - -
Sto6g0041 282 MobiDBLite consensus disorder prediction 42 91 - -
Sto6g0041 282 CDD AP2 104 164 IPR001471 GO:0003700|GO:0006355
Sto6g0041 282 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Sto6g0041 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 52 183 - -
Sto6g0041 282 MobiDBLite consensus disorder prediction 42 109 - -
Sto6g0041 282 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Sto6g0041 282 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Sto6g0041 282 PANTHER DNA-BINDING DOMAIN 52 183 IPR044808 GO:0003700|GO:0009873
Sto6g0041 282 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Sto6g0041 282 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0041 Sto-Chr6 619028 623460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0041 90 184 AP2-EREBP Transcription Factor Family AT2G44840 78.125 2.00e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g0041 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0041 K09286 - zju:107435141 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0041 6 619028 623460 Sto6g0041 6 619028 623460 ECH