Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0028 ATGGATTCCAATTTCTCTTCTTTGATGGAATCTGTTCATCAATACCAATTCCAATCACATTGCACCAACAGCAACGACGGTTCTGGCGTCGCTAAAACTGCATCTCCCAttcaaaaaaatgaaatggGCTCTTCAAACACGGCGCGTGCATCTCACGCGCCGTCCAGATGGAAGCATTACCGGGGCGTGAGGCGGAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGGGACCCGAAGAGGAATGGCGCTAGGGTTTGGTTGGGGACTTATGAGACCGAAGAGGGAGCAGCTTTGGCTTATGACAAAGCCGCTTTCAAGCTGCGCGGCTGCAAAGCCAAGCTCAACTTCCCTCACCTGATTGGCTCGGAGCCGACCAATGatgtggtggcggtggtgccCGAGAAGCCGGCGGCTCCAAAGCGGCACCTGCCGATGGAGATTCCGTCGCCGTTATCGGATTCGGATGGTTCACAAGATGGATccaagaggaggaagaagctaGCTGGTTTATTGAATAAGCTAGCCAAGAATAGAAGCCAAGTGCAAGTGTTTGAAATGGGCTCAAATTATGAAAATGTTGATCAATGGTTGGACTTGAGTCTCTTGGATGATATGATAGTGGGGGAGCCAATACCTCAACAGTTCCAGCTTAATCCTATCATGGTTCTTGAGGAAGCTATTGTGGGACAGCCTCCTCGAACCCTAGAGAGCATTCATCATCTGAGATGGCCAGGAGCCAAGCATTTGGAGGGGTACTCTCAGCATGAGTTGAGTGCCTGTTATTACTTGACTCACCCACCTCAAAGGTGGAATGAGCCCATGTTCTGTCTCCCCAGATTTTGTTCTCTGAAGGAGAGTTTACTTCTGGTATGGTGCATTCATAGGGAGAGGCGTTTTCCTTCAAGTGTTGTTTTTGATTCTGTGTTCGTTGTCTCTATGGAACTTCGTTGA 951 0.469 MDSNFSSLMESVHQYQFQSHCTNSNDGSGVAKTASPIQKNEMGSSNTARASHAPSRWKHYRGVRRRPWGKFAAEIRDPKRNGARVWLGTYETEEGAALAYDKAAFKLRGCKAKLNFPHLIGSEPTNDVVAVVPEKPAAPKRHLPMEIPSPLSDSDGSQDGSKRRKKLAGLLNKLAKNRSQVQVFEMGSNYENVDQWLDLSLLDDMIVGEPIPQQFQLNPIMVLEEAIVGQPPRTLESIHHLRWPGAKHLEGYSQHELSACYYLTHPPQRWNEPMFCLPRFCSLKESLLLVWCIHRERRFPSSVVFDSVFVVSMELR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0028 316 MobiDBLite consensus disorder prediction 23 52 - -
Sto6g0028 316 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700|GO:0006355
Sto6g0028 316 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Sto6g0028 316 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Sto6g0028 316 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 180 - -
Sto6g0028 316 MobiDBLite consensus disorder prediction 23 58 - -
Sto6g0028 316 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Sto6g0028 316 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Sto6g0028 316 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Sto6g0028 316 CDD AP2 58 119 IPR001471 GO:0003700|GO:0006355
Sto6g0028 316 PANTHER DNA-BINDING DOMAIN 2 180 IPR044808 GO:0003700|GO:0009873
Sto6g0028 316 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Sto6g0028 316 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0028 Sto-Chr6 513184 522989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0028 30 122 AP2-EREBP Transcription Factor Family AT2G44840 69.149 2.31e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g0028 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0028 K09286 - gmx:548037 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0028 6 513184 522989 Sto6g0028 6 513184 522989 ECH