Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0018 ATGGACTTACGAGTACAAATGAGTCATAAGCTTAGTGCCTTCGTCGTTGATAGCTCCGATCCTCCTCCATCGGCGACGACAACAATAACCacaaaaacgacgtcgtttcagAAGGCTGCTGATCCGACGTCGTACTCTCATTCGACTCAGAGTTCGAGCTTCCAAAACTGGACTAGTGATCATCACCTACCGTTGAAGGAGAACGACGCGGAGGATATGGTTCTCTATGGGGCTTTGCGTGATGCCGCCCGCACTGGATGGCTTCCCAAAATGGAAAATCAAAACTcgaatattgataataataataatgttcataatattaataacattattGGTGGTGCTGCTGTGGCGGCGAGTGGTAGCCACGCGCCGCCGAGGGGAGATGAGAGGCGGTACCGAGGAGTGCGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATCAGAGATCCAAAGAAGAACGGCGTGAGGGTGTGGCTTGGGACTTACGAGATGGCTGAGGATGCGGCTCTGGCTTATGACCGAGCCGCCTTCAAGATGCGTGGCTCCAAAGCTAAGCTGAATTTTCCTCACTTGATCGGCTCGGATCACGCCGAGCCCGTTCGAGTCAGCCTCAAGCGTCGCTCACCCGAGCTGACATTGCCATTGTCAATGcccccatcatcatcatcctcagCCTCGGCTTACTGGAGCGAAGCCGGAGAGAAGCGGAGTAAGCCGATAGATGGCGGCGTCGTCGACCATAGTGGAAATACTAGGGAAGTGGATAagggggtgacgtggcaatttTCCATGGATAATCAAACCTGGTGGTAA 813 0.4809 MDLRVQMSHKLSAFVVDSSDPPPSATTTITTKTTSFQKAADPTSYSHSTQSSSFQNWTSDHHLPLKENDAEDMVLYGALRDAARTGWLPKMENQNSNIDNNNNVHNINNIIGGAAVAASGSHAPPRGDERRYRGVRRRPWGKYAAEIRDPKKNGVRVWLGTYEMAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDHAEPVRVSLKRRSPELTLPLSMPPSSSSSASAYWSEAGEKRSKPIDGGVVDHSGNTREVDKGVTWQFSMDNQTWW 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0018 270 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Sto6g0018 270 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Sto6g0018 270 MobiDBLite consensus disorder prediction 214 230 - -
Sto6g0018 270 MobiDBLite consensus disorder prediction 19 47 - -
Sto6g0018 270 CDD AP2 139 191 IPR001471 GO:0003700|GO:0006355
Sto6g0018 270 MobiDBLite consensus disorder prediction 17 47 - -
Sto6g0018 270 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Sto6g0018 270 PANTHER BNAC04G53270D PROTEIN 55 233 - -
Sto6g0018 270 SUPERFAMILY DNA-binding domain 131 190 IPR016177 GO:0003677
Sto6g0018 270 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Sto6g0018 270 MobiDBLite consensus disorder prediction 211 251 - -
Sto6g0018 270 PANTHER DNA-BINDING DOMAIN 55 233 IPR044808 GO:0003700|GO:0009873
Sto6g0018 270 MobiDBLite consensus disorder prediction 234 251 - -
Sto6g0018 270 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Sto6g0018 270 PRINTS Ethylene responsive element binding protein signature 171 191 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0018 Sto-Chr6 350865 352814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0018 56 210 AP2-EREBP Transcription Factor Family AT2G44840 59.355 3.49e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g0018 AP2 8.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0018 K09286 - gmx:100793366 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0018 6 350865 352814 Sto6g0018 6 350865 352814 ECH