Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4412 ATGTCCGTACAACCCCCTACTCCTAATTCTGAGCCTGAGGTATGCAAAACAAGGAGCAAAACCCAGCACAAGCTAGTCAGAATCATTCTCACTGACCACGACGCTACGGATTCTGACACTTGCAGTGATGAAGATCAACCTCCAAGACCAAAAGGAAAGAAGCACATCACACACATCACTATGCATATTCCCTCATCTCCTTCTCTCAAGAGACCCAAGAAATGTCCCTCCTCCTCTCGCTGCCACAATAAGTTCAGAGGTGTTCGGCAGAGGCCGTGGGGCCGCTGGGCAGCCGAGATCCGAGACCCCAACCGTCGGAAGCGGCTCTGGCTCGGAACATTTGACACGGCGGAGGAAGCCGCCACCGTCTACGACAAGGCTGCGCTCACGCTCAAGGGTCCTAACGCCGTTACCAACTTCCCTCACTCCGTCTTGACGGAAAAGGAAACAACGCCCCCAACCAGCGACGGTTTTGTCTCGATGGCGTCTCCCACCTCAGTCCTGGCCTACGACAGCGATTCAACGCCGTTCGACGGTTTCAGTTTCGGCGACGTGGATGCCTTCGGTTTCGATAACCATGACTCACGATACCCTGTATCAACAGAACCTATATCAGCAGCTGCACTGCCACACTTGACTGAGTCATCATCTGAGTCATCGCCTTATGGTTCTCCCTCTCTTAGTCTTATATCCCCACCTTCATCAGCTTTTGTTTCAGCCTTGCAATCACCATATATATCTCCAAGGGCCTTCCTAGAAAACCCCTCCAACTCTGTGGATAATCCTCGTGTAcatcccaccaccaccacccatccTTCTCCGCCATTCTCCTACCGTGGTTCCCAATCCGAAGATATCCCAAGCAGTTCCTACACTCCACCCTCCGATCCCTACGAATTCTCCGATGACCTATCCGATACGAAGCTCAAATTTGTGACGTCTGTTCCTGTCCCTGACACGGCGGCGCCACCGCGCATCTCCTTCTCATTTCCAGTCCCGAGAATCTCCTTCGCAAAAGGCGCTGTTTCCCCTGCCAAACTTACGAGTTGCGACGTTTACATTGGATACCACGGCCAGAATAATAATCCCGATTTGCTGCGCTTTTGTAAGTGGCTTAAGTCGGAGCTTGAGCTTCATGGGATTGATTGCTTTGTTGCGGATAGAGCCAAGTATTCAGATAGTCAGAGCCATGAGATTGCCGACAGAGTCATCTGCTCAGTGGCATTCGGTTTGGTGGTCGTCACGCAATCCAGCTTTTTCAACCATCTCAGTTTGGAGGAGATTCGATTCTTCGCTCAAAAGAAGAACTTGCTCCCGCTCTTCTTCCAAACTAGGCCTGCTGAGCTTATGAATCTTCCTGATTGCAATTCAATTGATAAAGAGGCAATGGATGGGCTGATCAAGTTTCATGAATTCAATTTAGAGGCTATTGATGGTAATTGGAGAAGCTGCATATACAAAGCTGCTGGGATTCTCAGAGCAAGACTTGGGCGGAACAACATAAAAGGATATGACTATGAGAATGAGAGTTTACCTTTCCCCAGGAACACATACTTCGTCGGAAGAGAGAAGGAGATTACTGAGATTGAAAATCTCCTTTTTGGACGTGGAAATTGTTTGCAGCTAGATCATTCTACTGCAACCATCAAAGGAGAAGCCAGTGGACAATCTGAAGGACTGGCAGACGAGGAAAGCGACTCCGTTAGTAGCAGAGGAGGGAGATTTATTAGTCTAGAGATCAACAAGAGCAAAGAACCAACTTTAGAGCCTTGGGTTGAACTTGAACCAATCAAAGGTAAAAATTCGATCAAGAGGTTAAAACATAAGAAATCAAAAAGTGGTAACTGTAAGAGCTTATGTAGCAGTGTGATTTGCATCAATGGGGTTTCTGGAATTGGAAAATCAGAGCTGGCACTCGAATTTGCATACAGATACTACCAGAGGTATAAAATGGTCTTGTGGGTCGGTGGGGAAGCTCGGTATCTCAGGCACAACATATTGAATTTGTCTCTTGCTTTAAGTTTGGATGTCGGTGCTGATTCCGAGATGGAAAGGGGTCGCATTCGTAGCTTTGAGGAGCAAGAATTTGAAGCATTCAAGAGAATCAAGAGGGAGCTATTTGGTGATACGCCATACTTACTTATAATTGATAATCTTGAGACTGAAGAGGAGTGGTGGGAAGGGAAGGGTCTGCAAGATTTGATCCCAAGAAACACTGGGAGTACCCATGTGATTATTACCACTAGGTTGTCCAAAGTAATGAACTACGATACAATTCAGCTTCCGCCTATCACATTATCTGATGCAATGGTTCTgataagaggaagaaaaaagaaagagtatCCAGAAGAAGAGatagaaattttgaaaaaaattcatgacaaGTTAGGGAGGTTGAGCTTTGGGTTGTGGTTGATTGGGTCATTGCTGTCTGAACTTGAAGTTAGCCCCTCGGCTCTGCTTGAGGCAATAAACCAGGTTGCACTTGAAGAAGGTTCAGGTTCTTGTTGTTATATGAGCATTGCGGAAGAGCAGCAGTGGAAGAGCAATCCTTTCCTGATGAAGACCCTCCAGTTCTGCTTTGGGATTCTGGAAACAAGTAGAAGAAAAGGGAACGTCCTAGCCATGAGAATGCTTCTTGTGAGTGGGTGGTTTGCCCCAGCTCCCATTTCAGCAATTATGTTAGGCAATGCGGCCAAGAATATCCCTAGACCTAGTAGTAGTAGTGATGGCAAGTGGGGGGGTCATATAAGCTTGAGTTGCTTCTCATCTAAGGCTAAGGCATATTGGAAATGTGAACAAGACTCAGCCATGCTTCTCGTGAAAATGGGAGTTGCACGAAGAGGCATTGACAGCAAGAGAGATGGATATTGGATCCATTTGCATCCCATAGTGCGGGCATTCGCGAAAAGAAAAGGTGGTTTGCAATATGCCCAAGTTGCGGTTCAAGGAGTAATTAAGAAATTGGGGAACCCGTGGGAGCATTTATGGGCATCAGCTTTTCTTGTATTCGGGTTCAAATCTGAACCTCCACTTGTGGAGTTAAAGGCAATTGACATGGTTTTGTACGTGAAAAGAACAGCTCTCCCCCTTGCAATTCAAGCCTTCACCACATTCTCAAGATGCAATGCCGCAATGGAGCTCTTGAAGGTGTGCACAAATGCACTAGAAGAGGTTGAGAAGTCCTTCGTCTCCCAAATACAAGATTGGTCACACGAGTCAATTTGTTGGAAACGAAGAAGGCGCCAAAAAGTAGATGAGTACGTGTGGCAGGACGTGACTTTACTAAAGGCAACACTGCTAGAGAGTAGAGCCAAGTTGCTAGCGAGAGGGGGTCACCTTGACACCGCCAAAGAGCTGTGCAGAACATGTATCAGTATCAGAACTGTGATGCTTGGTCATAACCATGCCCACACCTTGGCTGCTCAGGAGACGTTAACCACACTAGTGAGAATGAGGAGCAAGATATTATGA 3474 0.46 MSVQPPTPNSEPEVCKTRSKTQHKLVRIILTDHDATDSDTCSDEDQPPRPKGKKHITHITMHIPSSPSLKRPKKCPSSSRCHNKFRGVRQRPWGRWAAEIRDPNRRKRLWLGTFDTAEEAATVYDKAALTLKGPNAVTNFPHSVLTEKETTPPTSDGFVSMASPTSVLAYDSDSTPFDGFSFGDVDAFGFDNHDSRYPVSTEPISAAALPHLTESSSESSPYGSPSLSLISPPSSAFVSALQSPYISPRAFLENPSNSVDNPRVHPTTTTHPSPPFSYRGSQSEDIPSSSYTPPSDPYEFSDDLSDTKLKFVTSVPVPDTAAPPRISFSFPVPRISFAKGAVSPAKLTSCDVYIGYHGQNNNPDLLRFCKWLKSELELHGIDCFVADRAKYSDSQSHEIADRVICSVAFGLVVVTQSSFFNHLSLEEIRFFAQKKNLLPLFFQTRPAELMNLPDCNSIDKEAMDGLIKFHEFNLEAIDGNWRSCIYKAAGILRARLGRNNIKGYDYENESLPFPRNTYFVGREKEITEIENLLFGRGNCLQLDHSTATIKGEASGQSEGLADEESDSVSSRGGRFISLEINKSKEPTLEPWVELEPIKGKNSIKRLKHKKSKSGNCKSLCSSVICINGVSGIGKSELALEFAYRYYQRYKMVLWVGGEARYLRHNILNLSLALSLDVGADSEMERGRIRSFEEQEFEAFKRIKRELFGDTPYLLIIDNLETEEEWWEGKGLQDLIPRNTGSTHVIITTRLSKVMNYDTIQLPPITLSDAMVLIRGRKKKEYPEEEIEILKKIHDKLGRLSFGLWLIGSLLSELEVSPSALLEAINQVALEEGSGSCCYMSIAEEQQWKSNPFLMKTLQFCFGILETSRRKGNVLAMRMLLVSGWFAPAPISAIMLGNAAKNIPRPSSSSDGKWGGHISLSCFSSKAKAYWKCEQDSAMLLVKMGVARRGIDSKRDGYWIHLHPIVRAFAKRKGGLQYAQVAVQGVIKKLGNPWEHLWASAFLVFGFKSEPPLVELKAIDMVLYVKRTALPLAIQAFTTFSRCNAAMELLKVCTNALEEVEKSFVSQIQDWSHESICWKRRRRQKVDEYVWQDVTLLKATLLESRAKLLARGGHLDTAKELCRTCISIRTVMLGHNHAHTLAAQETLTTLVRMRSKIL 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4412 1157 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Sto5g4412 1157 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Sto5g4412 1157 ProSiteProfiles TIR domain profile. 348 488 IPR000157 GO:0007165
Sto5g4412 1157 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Sto5g4412 1157 MobiDBLite consensus disorder prediction 1 15 - -
Sto5g4412 1157 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Sto5g4412 1157 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 211 1156 - -
Sto5g4412 1157 Gene3D - 338 461 IPR035897 -
Sto5g4412 1157 MobiDBLite consensus disorder prediction 1 55 - -
Sto5g4412 1157 Gene3D - 596 760 IPR027417 -
Sto5g4412 1157 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Sto5g4412 1157 MobiDBLite consensus disorder prediction 64 83 - -
Sto5g4412 1157 MobiDBLite consensus disorder prediction 16 52 - -
Sto5g4412 1157 MobiDBLite consensus disorder prediction 251 299 - -
Sto5g4412 1157 PANTHER DNA REPAIR PROTEIN RADA 211 1156 - -
Sto5g4412 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 829 IPR027417 -
Sto5g4412 1157 MobiDBLite consensus disorder prediction 251 296 - -
Sto5g4412 1157 SMART AAA_5 620 785 IPR003593 -
Sto5g4412 1157 SUPERFAMILY Toll/Interleukin receptor TIR domain 350 452 IPR035897 -
Sto5g4412 1157 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Sto5g4412 1157 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Sto5g4412 1157 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4412 Sto-Chr5 52604442 52619189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4412 16 170 AP2-EREBP Transcription Factor Family AT4G27950 43.478 9.82e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto5g4412 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4412 - - gmx:100781208 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2301 9 26370665 26372364 Sto5g4412 5 52604442 52619189 CCT
Sto5g4412 5 52604442 52619189 Sto5g4412 5 52604442 52619189 ECH