Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4406 ATGGATTTTCTCCTGTTGGAGAAGACCCTAATCGCCCTCTTCGTGGCCGTCGTGCTCGCTATTACCATCTCCAAACTCCGAGGAAAGCGCTTCAAGCTCCCTCCCGGTCCACTTCCCGTTCCTATATTCGGAAACTGGCTCCAAGTCGGCGATGACCTCAACCACCGCAATCTCACCGATTTGGCCAAGAAATTCGGCGATATCTTCCTCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTCTCCTCGCCCGACCTCGCCAAGGAGGTCCTCCACACCCAGGGCGTCGAATTCGGCTCCCGCACACGCAATGTCGTCTTCGATATCTTCACCGGTAAGGGTCAGGATATGGTCTTCACTGTCTACGGTGAGCACTGGAGGAAGATGAGGCGCATCATGACCGTCCCTTTTTTCACCAACAAGGTCGTTCAGCAGTATCGCCGTGGCTGGGAAGATGAGGTCGCAAGTGTCGTCCATGACGTCAAGAACAATCCCGATTCCTCCACCAATGGCATCGTCTTGAGGAGGCGGTTGCAGCTCATGATGTACAACAACATGTACAGGATTATGTTCGATCGAAGGTTCGAGAGTGAGGACGACCCTATGTTCCAGAAACTCCGCGCTTTGAACGGAGAAAGGAGTCGTCTGGCTCAGAGCTTTGATTATAACTACGCAATTGAGACAACTCTATGGTCAATCGAGTGGGGCATTGCAGAACTGGTGAACCACCCAGAGATTCAGAAGAAGGTCCGAGAGGAGATAGACCGGGTTCTAGGACCGGGGCAGCAGGTGACCGAACCAGACCTCCAAAAGCTACCATACCTGCAGGCAGTGATCAAAGAAACACTTCGTCTTCGAATGGCAATTCCACTGCTGGTCCCACACATGAACCTTCACGACGCAAAGCTTGGAGGGTACGACATCCCAGCAGAGAGCAAAATCTTGGTGAACGCATGGTGGCTAGCCAACAACCCGGCCCACTGGATGAACCCGGAGGAGTTCCGACCCGAGAGATTCCTGGAGGAAGAGTCCAAAGTGGAGGCCAATGGGAATGACTTTAGGTACCTTCCCTTCGGAGTGGGCAGAAGAAGCTGCCCTGGAATTATCCTTGCGTTGCCTATTCTTGGCATCACTTTGGGACGTTTGGTACAAAACTTTGAGCTCTTGCCTCCTCCTGGACAATCCAAGCTTGATACCTCTGAGAAAGGCGGGCAGTTTAGTTTGCACATTCTCAATCATTCCACCATTGTGGCCAACCCAAGGTCCTTCTAG 1272 0.5307 MDFLLLEKTLIALFVAVVLAITISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRRGWEDEVASVVHDVKNNPDSSTNGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPMFQKLRALNGERSRLAQSFDYNYAIETTLWSIEWGIAELVNHPEIQKKVREEIDRVLGPGQQVTEPDLQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWMNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILNHSTIVANPRSF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4406 423 PRINTS P450 superfamily signature 224 241 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS P450 superfamily signature 277 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS P450 superfamily signature 356 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS E-class P450 group I signature 24 43 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS E-class P450 group I signature 233 259 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS E-class P450 group I signature 276 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS E-class P450 group I signature 317 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS E-class P450 group I signature 355 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PRINTS E-class P450 group I signature 365 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 225 423 - -
Sto5g4406 423 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 224 - -
Sto5g4406 423 SUPERFAMILY Cytochrome P450 34 403 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 Pfam Cytochrome P450 34 223 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 Pfam Cytochrome P450 226 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 Gene3D Cytochrome P450 27 220 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 Gene3D Cytochrome P450 221 412 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Sto5g4406 423 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 358 367 IPR017972 GO:0005506|GO:0016705
Sto5g4406 423 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 225 423 - -
Sto5g4406 423 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4406 Sto-Chr5 52573453 52575908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4406 225 422 Monolignol Biosynthesis Gene Families AT2G30490 88.384 3.30e-126 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4406 K00487 - ncol:116262247 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2297 9 26335107 26338081 Sto5g4406 5 52573453 52575908 CCT
Sto5g4406 5 52573453 52575908 Sto5g4406 5 52573453 52575908 ECH