Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4402 ATGAAAATTCAGTTTTCTGTAAAAAGTTCCACCTTGAAGAATCTGGTTGGAGGGAATGCAACTTCTGTAACAAGCAGTATTTCATTGGTTGTACTCTTACATGCCCTTATGTTTGACACCAAGCATCACTGTGTCAGCAGTCTGGTAGTTATGCATATGCAAAATACTGAAATTTCTAATGGGTCTATTACGTCAAACAAAAATGTTGCAAGTAATGGACATTCTTCTCATATTGATGGTAGACTCTTTGTGGATAGTGTTGATGAAGGGAAACTTATGCAACTATGCAGAATTGTTGAAGCTAGTGAATCTAGCCATTGGCCTCAAGCTCAGAGAGATGGGATAATTTTATCTAGTGGCCAAAACAGCCAAGAAGTTAAATGTCCAATCAGAGAAGTGGATGCAGGATTTCCAAATATGATGAATCCATCTGTTCAGTCACTAACATTTGCCAAGTTAGAAAATAGTAGACCAACATGGGAGGTAAAAAATATGAATGAATTACCTGGACAGCCATCTTTGAGTATGTCTCTGGGAACTCCATCAGGAAACTCTGTCCTGCCTTCTTCTGGAGAGACTGTAGAAGGAAAAGTTGAGGAAAAACCATCTCCCTTTCACCAAGTTCAAAGATCTCGGCCTATATTGCCTAAACCATTGAAGACTGGGCTTTCCATGAACCTAGAAACAAATAAAGGAACGATTTCTCAGGCACGCATTGCCCGGCCCCCTGCTGACGGAAGAGGCAAGAATCAGTTACTTCCTCGATATTGGCCCCGGATCAGTGATCAAGAGCTGGAGCAGTTGTCTGGAGATTTGAAGTCCACCGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTTCCAAAAGCATGTGCTGAAGCTTATTTTCCTCCCATTTCTCAATCAGAAGGTCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCCGATTTTGGCCTAACAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTACGTGCGGGTGATACTGTGATATTTAGTCGGATAGATCCTGGGGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTGGAGAAACACAGGATGCCTCTACATCTGCGCCTTCTAATGGCATTTTAATGAAGGAAGCAACTTGTTCTGGGGCCACTGAGAATCTTCCTTCAGGAAATAGTTATTCTGTTCTTCTCCAGTCCATGAAGGAGAACAGGGAATCTCAGTTCAATGGATTGTCAGAACATCTGCATTTAGGTAGTGTGGAAGCTAGCTTGCCGAAGACAGAAAATTGTGGGGACATAACAAACAATGATTCACTGAAGCAACCAATTTCAGTCTCAGAGAAGAAGAGGACTCGGAATATTGGGCATAAAAGTAAGAGGTTGCTCATTCATAGTGAAGATGCTCTGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTACTTCGTCCCCCACCTAGTGTCAAACCAAGCATTGTCACAATTGAGGACCATGTATTTGAAGAATATGATGAGCCGCCAGTTTTTGGAAAGAGAACTATATTCAGTACTAATTCATCCCGGGGACAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGAGAAGGTTACCAGTTGATGTTCTACTTCCTCCAAAGTGGACATGTTCAGAAAATGTCTGGGATGCAAGCAGGTCTCTGTGTTCTGCACCAGAAGAGCTCGGTCCAAAGGAATTGGAAAACTTTGGGAGAACTAGAAAAGGTGCAATCCTACTATCTGTATCTTACAAAAGCTCTACAACTGTCATATTTAGAACagggttagaacttagaagtcaATGTAGCAGAAattttaagaagaaaagaattgcAGAAAACAGTAAGACACTCCAAGAACATGAACCTTCTGGCCTAGATGCTCTTGCCAGTGTGGCCGTTCTAGGAGATAATCTTCTTGGCCCTGCTGAATCGTCCGCAGGAGTCACCACCAAACATCCTCGACACCGTCCAGGATGCACTTGCATAGTGTGCATCCAGCCACCTAGTGGGAAGGGGAGACATAAGCCGACATGTACTTGCAATGTGTGCATGACAGTGAAGCGCCGCTTCAAAACCCTTATGATGCGTAAGAAGAAACGCCAATCAGAACGTGAAGCAGATGCCGCCCAGAAGGAACAAAACCGCAAGAGGGATGAAGCAGAAATGAATGGAGCATCAAGAGATGATACAAGTTGTTCGGAAAAAGAGGAAGGCTTAACCAGAGGTCAGCCTGAGGTTGGTGAACCCAGTTCTGCACAAATAGATCTCAATTGTCATCCCAACCGTGAAGACATGCAAGTTGATGTGCCAGGACTGAGCATGACTAGTCATCTTGAAACAACAAACTACCTATTATAG 2454 0.4283 MKIQFSVKSSTLKNLVGGNATSVTSSISLVVLLHALMFDTKHHCVSSLVVMHMQNTEISNGSITSNKNVASNGHSSHIDGRLFVDSVDEGKLMQLCRIVEASESSHWPQAQRDGIILSSGQNSQEVKCPIREVDAGFPNMMNPSVQSLTFAKLENSRPTWEVKNMNELPGQPSLSMSLGTPSGNSVLPSSGETVEGKVEEKPSPFHQVQRSRPILPKPLKTGLSMNLETNKGTISQARIARPPADGRGKNQLLPRYWPRISDQELEQLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRIDPGGKLVMGFRKASNSGETQDASTSAPSNGILMKEATCSGATENLPSGNSYSVLLQSMKENRESQFNGLSEHLHLGSVEASLPKTENCGDITNNDSLKQPISVSEKKRTRNIGHKSKRLLIHSEDALELRLTWEEAQDLLRPPPSVKPSIVTIEDHVFEEYDEPPVFGKRTIFSTNSSRGQEQWAQCDDCSKWRRLPVDVLLPPKWTCSENVWDASRSLCSAPEELGPKELENFGRTRKGAILLSVSYKSSTTVIFRTGLELRSQCSRNFKKKRIAENSKTLQEHEPSGLDALASVAVLGDNLLGPAESSAGVTTKHPRHRPGCTCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREADAAQKEQNRKRDEAEMNGASRDDTSCSEKEEGLTRGQPEVGEPSSAQIDLNCHPNREDMQVDVPGLSMTSHLETTNYLL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4402 817 MobiDBLite consensus disorder prediction 171 191 - -
Sto5g4402 817 ProSiteProfiles B3 DNA-binding domain profile. 280 381 IPR003340 GO:0003677
Sto5g4402 817 Coils Coil 731 760 - -
Sto5g4402 817 CDD B3_DNA 278 379 IPR003340 GO:0003677
Sto5g4402 817 SMART B3_2 280 381 IPR003340 GO:0003677
Sto5g4402 817 Pfam B3 DNA binding domain 280 379 IPR003340 GO:0003677
Sto5g4402 817 MobiDBLite consensus disorder prediction 730 774 - -
Sto5g4402 817 SUPERFAMILY DNA-binding pseudobarrel domain 278 379 IPR015300 -
Sto5g4402 817 MobiDBLite consensus disorder prediction 171 209 - -
Sto5g4402 817 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 68 808 - -
Sto5g4402 817 Gene3D - 539 593 - -
Sto5g4402 817 MobiDBLite consensus disorder prediction 726 805 - -
Sto5g4402 817 ProSiteProfiles Zinc finger CW-type profile. 545 595 IPR011124 GO:0008270
Sto5g4402 817 Pfam CW-type Zinc Finger 550 592 IPR011124 GO:0008270
Sto5g4402 817 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 68 808 - -
Sto5g4402 817 Gene3D - 258 385 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4402 Sto-Chr5 52551593 52556825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4402 136 799 B3 DNA Binding Superfamily AT2G30470 52.924 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto5g4402 B3 7.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4402 - - gmx:100789848 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2296 9 26309334 26316054 Sto5g4402 5 52551593 52556825 CCT
Sto5g4402 5 52551593 52556825 Sto5g4402 5 52551593 52556825 ECH