Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4401 ATGGATCTCTTGCACTCCGATCCCTTCACCGACGCCTCATCCACCGTCAGCCTCGAAGACGACGACCTCTTCTCCACCTACATTGACGTCGAGAAGCTCGTTCAGTCCGGTATTGCTATTGCTGAGAGTGGATCGGATCAGAATATTGAGGAGGCAAAGAGAGCCATGCCTCCTGATAAGTTAGCCCAGCTCTGGGCAATTGATCCCAAGCGTGCCAAGAGAATACTTGCAAATCGTCAATCCGCTGCTCGATCAAAAGAGAGAAAGGCTCGTTATATGAAAGAACTTGAGCGTAAACTTCAGACCCTTCAGACTGAAGCCACGGCCCTTTCTGCCCAACTTACATTGTATGAGAGGGACACAAGAAGTCTGAGTACTGAAAATACAGAGCTCAAGCTTCGTCTGCAAGCCATGGATCAACAGGCACAGCTTCGTGATGCTTTCAGTGAAGCGCTGAAGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGGgagagggagatgatgaacccCTCTGACTCTGAGTCTTTTAATCTGGAAATGCATCAGATGCCATTTACTTCTTCAAATTTCTTTCCACTTCCGCTGAATTCATATCCTAATAATTCTGGTCACAACAACATACAGTTGCCACCATTTAGTCACTTCCCTCCATCATCTATCATGCCAAGTACTCATCAACTGCAGCAAGCAAATTGTCATCCACTCTCAGAAATAGTTCAGAATAATAGTAGCAAAGGATCATTCGTTGGGAAGTCTGATGTCTCCTCACTTTCTGCAAGCGAGAGTAGCACAACATTTTGA 804 0.4465 MDLLHSDPFTDASSTVSLEDDDLFSTYIDVEKLVQSGIAIAESGSDQNIEEAKRAMPPDKLAQLWAIDPKRAKRILANRQSAARSKERKARYMKELERKLQTLQTEATALSAQLTLYERDTRSLSTENTELKLRLQAMDQQAQLRDAFSEALKKEVERLKIATGEREMMNPSDSESFNLEMHQMPFTSSNFFPLPLNSYPNNSGHNNIQLPPFSHFPPSSIMPSTHQLQQANCHPLSEIVQNNSSKGSFVGKSDVSSLSASESSTTF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4401 267 MobiDBLite consensus disorder prediction 244 267 - -
Sto5g4401 267 Gene3D - 70 120 - -
Sto5g4401 267 PANTHER ATBZIP TRANSCRIPTION FACTOR 47 263 - -
Sto5g4401 267 PANTHER ATBZIP TRANSCRIPTION FACTOR 1 40 - -
Sto5g4401 267 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 47 263 - -
Sto5g4401 267 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 40 - -
Sto5g4401 267 SUPERFAMILY Leucine zipper domain 70 121 IPR046347 GO:0003700|GO:0006355
Sto5g4401 267 SMART brlzneu 66 130 IPR004827 GO:0003700|GO:0006355
Sto5g4401 267 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 68 131 IPR004827 GO:0003700|GO:0006355
Sto5g4401 267 Coils Coil 86 120 - -
Sto5g4401 267 CDD bZIP_plant_RF2 71 120 IPR044759 GO:0003700|GO:0006355
Sto5g4401 267 Pfam bZIP transcription factor 70 128 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4401 Sto-Chr5 52548244 52549714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4401 2 184 bZIP Transcription Factor Family AT2G40620 53.425 2.92e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto5g4401 bZIP_1 6.5e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4401 - - gmx:100815680 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2287 9 26224713 26227278 Sto5g4401 5 52548244 52549714 CCT
Sto5g4401 5 52548244 52549714 Sto5g4401 5 52548244 52549714 ECH