Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4399 ATGCCCCTCAATCTCATCATGCTTCTCTTTCTCCTCTTCCAATTCCAACAGGCGGCGGCGGACTACGGGGGGTGGCAGAGTGCTCATGCCACTTTCTACGGCGGCGGTGATGCTTCTGGCACCATGGGAGGAGCATGTGGGTATGGGAATTTGTACAGCCAGGGATACGGAACCAACACTGCAGCTCTGAGCACGGCTTTGTTCAACAATGGCTTAACCTGCGGGGCTTGTTATGAAATGACATGCACCAATGACCCAAGATGGTGCAAGCCTGGCTCTATTATTGTTACTGCCACAAACTTCTGCCCACCAAACTTCGCTTTGCCTAACAATAATGGTGGTTGGTGTAACCCTCCTCTCCAGCATTTTGACATGGCTCAACCAGCTTTTCTCCAAATTGCTGAATACAGAGCTGGAATTGTACCCGTCTCCTTCCGAagAGTGGCATGCATGAAAAAGGGAGGCATAAGATTCACCATAAATGGACACTCCTACTTCAATTTGGTATTGATAAGCAACGTGGGAGGTGCAGGGGATGTGCATGCCGTGTCCATCAAAGGCTCAAGGACTGGTTGGCAAAGCATGTCAAGGAATTGGGGTCAAAATTGGCAGAGCAACTCTTATCTCAATGGCCAAAGCCTTTCTTTCCAAGTCACCACCAGTGATGGAACAACTGTCACAGCCTACAACGTGGCACCACCCAACTGGCAGTTTGGTCAGACCTTTGAAGGGGGTCAGTTTTAG 744 0.4973 MPLNLIMLLFLLFQFQQAAADYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMTCTNDPRWCKPGSIIVTATNFCPPNFALPNNNGGWCNPPLQHFDMAQPAFLQIAEYRAGIVPVSFRRVACMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQSLSFQVTTSDGTTVTAYNVAPPNWQFGQTFEGGQF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4399 247 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Sto5g4399 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Sto5g4399 247 SUPERFAMILY Barwin-like endoglucanases 9 173 IPR036908 -
Sto5g4399 247 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Sto5g4399 247 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Sto5g4399 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Sto5g4399 247 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Sto5g4399 247 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Sto5g4399 247 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Sto5g4399 247 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Sto5g4399 247 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Sto5g4399 247 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Sto5g4399 247 Gene3D - 12 151 IPR036908 -
Sto5g4399 247 Pfam Lytic transglycolase 60 145 IPR009009 -
Sto5g4399 247 SMART dpbb_1 60 145 IPR007112 -
Sto5g4399 247 PANTHER EXPANSIN-A15 5 247 IPR002963 GO:0009664
Sto5g4399 247 PANTHER EXPANSIN 5 247 - -
Sto5g4399 247 Gene3D - 154 247 IPR036749 -
Sto5g4399 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4399 Sto-Chr5 52535516 52536437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4399 1 247 Expansin Gene Family AT2G40610 79.032 2.79e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4399 - - sind:105170460 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2281 9 26198038 26199522 Sto5g4399 5 52535516 52536437 CCT
Sto5g4399 5 52535516 52536437 Sto5g4399 5 52535516 52536437 ECH
Sto5g4399 5 52535516 52536437 Sto9g2611 9 28484161 28488547 ECH
Sto9g2281 9 26198038 26199522 Sto5g4399 5 52535516 52536437 ECH